PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC026831.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 28098.4 Da PI: 5.0414 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.5 | 1.5e-41 | 5 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p GfrF Pt+eel+++yL+++++g+ +l ++i+ +diy +ePw+Lp+ +++++++w+fF++ ++++a+g r++r+t+ gyWkatg+ v+ EcC026831.20 5 PTGFRFYPTEEELISFYLHNQLQGSLqDQLRRIIPVLDIYATEPWNLPElsgeLCRKDKEQWFFFAPMQEREARGGRPSRSTAVGYWKATGSPGYVH 101 89*********************99834555669999**********9656754455777************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s++++++g+kk +vfy g+ap+g+kt+W ++eyr+ EcC026831.20 102 SSDNKAIGMKKAMVFYVGKAPTGRKTKWKLNEYRA 136 *********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-43 | 3 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.983 | 4 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-21 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEDHPTGFRF YPTEEELISF YLHNQLQGSL QDQLRRIIPV LDIYATEPWN LPELSGELCR 60 KDKEQWFFFA PMQEREARGG RPSRSTAVGY WKATGSPGYV HSSDNKAIGM KKAMVFYVGK 120 APTGRKTKWK LNEYRAIEMI SPPNSNTPSS SMPVFKLRQE FALCRVYVVS GSSRAFDRRP 180 LELVVAETIQ GGDDGSGDGG GGNGRLVSSS RSVVENDAGG SSYTETTSME TEEPIWDWEP 240 IWDSEPFWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-33 | 5 | 174 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-33 | 5 | 174 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-33 | 5 | 174 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-33 | 5 | 174 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-33 | 5 | 174 | 18 | 170 | NAC domain-containing protein 19 |
4dul_B | 7e-33 | 5 | 174 | 18 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034223.1 | 1e-162 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 4e-84 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059AAV8 | 1e-155 | A0A059AAV8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034223.1 | 1e-161 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 8e-82 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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