PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC026598.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 800aa MW: 89233.7 Da PI: 4.9976

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC026598.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	360.8	2e-110	423	797	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+a+s+gd++ a++ L++++e++sp+gd+ qRla+yf+++L+arl++s++++ + ++ +++++ ++ l+a++l ++P+ k+s EcC026598.10 423 LRTLLILCAQAISTGDFRTANESLKQIRENSSPSGDASQRLAHYFANGLEARLVGSGTRMQHLFSIYVARRTSAADILKAYHLHISTCPFSKLSICF 519 5789***************************************************************9999******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 aN +Il+ +e+++++HiiDf+i+ G+QWp+L+q+L+sR+egp +lRiTg++ p++g +e+lee+g+ L+k +++++vpfefn +v+k++e+++le EcC026598.10 520 ANYMILRFAEKATTLHIIDFGIGFGFQWPTLIQKLSSRSEGPCKLRITGIELPQAGfrPSEKLEEIGRHLEKCCKRFNVPFEFNYIVSKNWESVKLE 616 ***************************************************9************************************* PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L+++++E++aVn++ + llde+v + +rd+vL+l+++++P+++v++ ++ + n++ F++rf eal + sa++d+++a l +s+er ++Erel EcC026598.10 617 DLKIQSNETVAVNSSDRFRILLDETVGDNCPRDAVLNLIWQIKPDIFVHAVSNGSFNAPFFMTRFREALFHLSAIYDMFDAILDGDSNERLVIEREL 713 ********************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 g+ei+n+vaceg+er+er et+++W+ r ++aGFk++pl+++ +k + +++ + + + ++e+ +++++ W++r ++ S+W EcC026598.10 714 HGWEIMNIVACEGSERVERSETYKQWQVRHMRAGFKALPLDQELMKFFRGKMKEWYHKDFALNEDGNWMLQAWRGRIIIGSSCW 797 ****************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.041	397	778	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-108	423	797	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence Send to blast
MTMDPLFFDF SARINGDDRP IDSHAFSPSP DRYSGLTDGF FLDDPFLDLK SSDSAFLLNE 60 VDPANDLPST SVDLGIGDLK FPSTSGISDG GPFGPSMSSN SALSLGGYSL SPSGDTDSSD 120 PVLKYISQML MEENMEEQPW EFANQVALQN AEKSLYDALG QQHSEVSDQS PSQLVLSHNI 180 ESPNSNLSGS SSACGSRDAT SVTVSSSDSA DANILYTIEE HGHAVQENSD LDFPSSNVDS 240 SSRLLSNSSS SITNYDDGSE ESLHKLLVKS IFSDSESMVQ FKKGLEEASK FLPTNNQLGI 300 NPGDSKPPSE TEKGTPRMRI SEEINMRRST DGFKGLKNHK RDEDAFDEGK AKKQIALYTE 360 ESEFSDLFNK LLLCNENGEA MCSGDKSVET GLSKDIRSQR NVHSSNRGRG RGKKQGSENT 420 VDLRTLLILC AQAISTGDFR TANESLKQIR ENSSPSGDAS QRLAHYFANG LEARLVGSGT 480 RMQHLFSIYV ARRTSAADIL KAYHLHISTC PFSKLSICFA NYMILRFAEK ATTLHIIDFG 540 IGFGFQWPTL IQKLSSRSEG PCKLRITGIE LPQAGFRPSE KLEEIGRHLE KCCKRFNVPF 600 EFNYIVSKNW ESVKLEDLKI QSNETVAVNS SDRFRILLDE TVGDNCPRDA VLNLIWQIKP 660 DIFVHAVSNG SFNAPFFMTR FREALFHLSA IYDMFDAILD GDSNERLVIE RELHGWEIMN 720 IVACEGSERV ERSETYKQWQ VRHMRAGFKA LPLDQELMKF FRGKMKEWYH KDFALNEDGN 780 WMLQAWRGRI IIGSSCWVPI

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence Send to blast

MTMDPLFFDF SARINGDDRP IDSHAFSPSP DRYSGLTDGF FLDDPFLDLK SSDSAFLLNE  60
VDPANDLPST SVDLGIGDLK FPSTSGISDG GPFGPSMSSN SALSLGGYSL SPSGDTDSSD  120
PVLKYISQML MEENMEEQPW EFANQVALQN AEKSLYDALG QQHSEVSDQS PSQLVLSHNI  180
ESPNSNLSGS SSACGSRDAT SVTVSSSDSA DANILYTIEE HGHAVQENSD LDFPSSNVDS  240
SSRLLSNSSS SITNYDDGSE ESLHKLLVKS IFSDSESMVQ FKKGLEEASK FLPTNNQLGI  300
NPGDSKPPSE TEKGTPRMRI SEEINMRRST DGFKGLKNHK RDEDAFDEGK AKKQIALYTE  360
ESEFSDLFNK LLLCNENGEA MCSGDKSVET GLSKDIRSQR NVHSSNRGRG RGKKQGSENT  420
VDLRTLLILC AQAISTGDFR TANESLKQIR ENSSPSGDAS QRLAHYFANG LEARLVGSGT  480
RMQHLFSIYV ARRTSAADIL KAYHLHISTC PFSKLSICFA NYMILRFAEK ATTLHIIDFG  540
IGFGFQWPTL IQKLSSRSEG PCKLRITGIE LPQAGFRPSE KLEEIGRHLE KCCKRFNVPF  600
EFNYIVSKNW ESVKLEDLKI QSNETVAVNS SDRFRILLDE TVGDNCPRDA VLNLIWQIKP  660
DIFVHAVSNG SFNAPFFMTR FREALFHLSA IYDMFDAILD GDSNERLVIE RELHGWEIMN  720
IVACEGSERV ERSETYKQWQ VRHMRAGFKA LPLDQELMKF FRGKMKEWYH KDFALNEDGN  780
WMLQAWRGRI IIGSSCWVPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-38	427	753	8	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018719698.1	0.0	PREDICTED: scarecrow-like protein 34
TrEMBL	A0A059D484	0.0	A0A059D484_EUCGR; Uncharacterized protein
STRING	XP_010043539.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14