PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC026129.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 206aa    MW: 23088 Da    PI: 8.4421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC026129.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20104155155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++y+GVr+++ +g+++Ae rdp++ng  +r++lg++ t+e+Aa a+++a+ k++g
  EcC026129.10 104 THYRGVRRRP-WGKYAAEMRDPKKNG--ARIWLGTYETPEDAALAYDQAAFKMRG 155
                   68********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-15104155IPR001471AP2/ERF domain
CDDcd000181.40E-29104165No hitNo description
SMARTSM003801.2E-37105169IPR001471AP2/ERF domain
PROSITE profilePS5103223.459105163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-31105164IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-23105164IPR016177DNA-binding domain
PRINTSPR003672.7E-10106117IPR001471AP2/ERF domain
PRINTSPR003672.7E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
DDDAVNAAFS TQTPANMCRR CSSFSNPLLM ESWSELPLKV DDSEDMVVYS ALQDALNSGW  60
TVPLASSLEL DFEVTTIDYN SVGLATKEKQ ETVEREVQVP VKKTHYRGVR RRPWGKYAAE  120
MRDPKKNGAR IWLGTYETPE DAALAYDQAA FKMRGCKAKL NFPHLIGSTD YEPIRVSLKR  180
RSAEPSLPST SSGESFLTGT KRRKRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-31101170170ATERF1
3gcc_A2e-31101170170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018732518.11e-110PREDICTED: ethylene-responsive transcription factor 13
SwissprotQ8L9K14e-63ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A059B8H01e-112A0A059B8H0_EUCGR; Uncharacterized protein
STRINGXP_010067932.11e-124(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-65ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]