PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC025836.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Dof | ||||||||
Protein Properties | Length: 140aa MW: 15607.5 Da PI: 10.7226 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.8 | 4.3e-37 | 48 | 106 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ lkcprCdstntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ EcC025836.10 48 PSEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKRP 106 67899***********************************************9876664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-23 | 49 | 105 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-32 | 51 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.643 | 52 | 106 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 54 | 90 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MGLSTKQVSN DGFDWNQSLL QDHHQTLEIP KSLPMKRSLQ QQNQLNQPSE PLKCPRCDST 60 NTKFCYYNNY NKSQPRHFCK ACKRHWTKGG TLRNVPVGGG RKNKRPKPSH PSSAAANSSS 120 AASRRILTAN TTTASDAPVQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052346.1 | 6e-99 | PREDICTED: dof zinc finger protein DOF1.8 isoform X1 | ||||
Swissprot | O82155 | 4e-31 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A059CDL1 | 7e-70 | A0A059CDL1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052346.1 | 2e-98 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1269 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-30 | TARGET OF MONOPTEROS 6 |
Publications ? help Back to Top | |||
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