PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC025541.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | SBP | ||||||||
Protein Properties | Length: 394aa MW: 41576 Da PI: 9.001 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136.2 | 1e-42 | 96 | 171 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls+ak y++rhkvC +hsk+++v+v+g+eqrfCqqCsrfh+l+efD++krsCrrrLa+hnerrrk+ EcC025541.20 96 RCQVEGCRVDLSDAKAYYSRHKVCGMHSKSATVIVAGIEQRFCQQCSRFHQLTEFDQGKRSCRRRLAGHNERRRKP 171 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.7E-35 | 90 | 158 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.137 | 94 | 171 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-40 | 95 | 175 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-32 | 97 | 170 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MDVGSGSWTT ESGSSSPPPL ESLNGLKFGQ KIYFQNNNSS NNAAAPKHGS GSGSGSGSGS 60 SSAAAPAPGS GTPPKKVRAS AGGGACGAIQ GGQPPRCQVE GCRVDLSDAK AYYSRHKVCG 120 MHSKSATVIV AGIEQRFCQQ CSRFHQLTEF DQGKRSCRRR LAGHNERRRK PPPGSLLSSR 180 YGRLQSSIFE NTTRVGSFLM DFTAYPKHAW SAPRFSERTT PGDLVPGPGK VYPHPWQSSP 240 ENPPSDLFLQ CSSGGTTAFP APGIPPGECF TGVADSSCAL SLLSNQPWGS TNQPSPLGTN 300 HMVHPQGSTL AQSMPPHSSA IHFTGPGSAW AFKGNDAGGS SIGLAADLGL GQFSQPLNNQ 360 FSGDMELSQH SRRQFMELDP SRAYDSTHQT HWSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-31 | 97 | 170 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057993.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q700W2 | 4e-68 | SPL9_ARATH; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A059DIL4 | 0.0 | A0A059DIL4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010057993.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2144 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 6e-70 | squamosa promoter binding protein-like 9 |