PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC025474.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 248aa MW: 27183.2 Da PI: 7.334 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.2e-14 | 23 | 65 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T++Ed ++ ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ EcC025474.20 23 GGFTEDEDNIICNLYNEIGSR-WSVIASQLP-GRTDNDVKNYWNT 65 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.262 | 1 | 16 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-11 | 2 | 28 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.59E-22 | 3 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.469 | 17 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-12 | 21 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 23 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.77E-10 | 25 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-19 | 29 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0008408 | Molecular Function | 3'-5' exonuclease activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
LRRCGKSCRL RWLNYLRPDI KHGGFTEDED NIICNLYNEI GSRWSVIASQ LPGRTDNDVK 60 NYWNTKLKKK RLAGKVNGAN NSSYNTMSTS NAPALLGFAS NHPSGSPNLD MYHRGFSVSG 120 INTFMAAECQ VIYDRATTAN VPNSAYYPYT GFDHIKSNEI EASSKVSTSS ISNSSSISSS 180 SSSLAMDGKP SLLTCDKGTL DEAAAMMDFG FGFPFDAVNN GIWFQERAQD NSLNCGSYIS 240 SSDLNYIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-20 | 3 | 70 | 40 | 107 | B-MYB |
1h8a_C | 1e-19 | 3 | 70 | 60 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047308.1 | 0.0 | PREDICTED: transcription factor RAX2 | ||||
TrEMBL | A0A059CLD0 | 0.0 | A0A059CLD0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047308.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 6e-42 | myb domain protein 68 |