PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC025257.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YB
Protein Properties Length: 183aa    MW: 20442.3 Da    PI: 5.3448
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC025257.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1681.2e-5222117297
         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                   +eqd++lPianv+rimk+ lP nakisk+aket+qecvsefisfvtseasdkc++e+rkt+ngdd++wa+  lGf+dy+ +l+ yl++yre+ege+
  EcC025257.10  22 KEQDQLLPIANVGRIMKQNLPPNAKISKEAKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDICWAMQALGFDDYASALRRYLHRYREIEGER 117
                   79*******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.4E-5119131IPR009072Histone-fold
SuperFamilySSF471132.33E-3824125IPR009072Histone-fold
PfamPF008081.8E-272791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.3E-175573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.3E-177492No hitNo description
PRINTSPR006153.3E-1793111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDESNNNPGV ADNALGDDGQ FKEQDQLLPI ANVGRIMKQN LPPNAKISKE AKETMQECVS  60
EFISFVTSEA SDKCRKERRK TVNGDDICWA MQALGFDDYA SALRRYLHRY REIEGERVNQ  120
EKAASGGSEG LATDHYRWHE QSSNAIIGHQ HPSNSQAEEA STSLLSFDAS DQRRKSGSSS  180
RPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4421112192Transcription factor HapC (Eurofung)
4g92_B3e-4421112192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018716566.11e-133PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO822489e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A059B6281e-132A0A059B628_EUCGR; Uncharacterized protein
STRINGcassava4.1_018746m5e-64(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-58nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]