PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC025031.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 307aa    MW: 32466.9 Da    PI: 6.9634
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC025031.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-081358346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +W++e d+ + +a + +       W+++a+ ++ g+tl+++k+++ +
     EcC025031.30 13 SWSKEQDKAFENALATHFEVspdWWEKVASDVP-GKTLEEIKLHYED 58
                     7****************7448889*********.***********76 PP
2Myb_DNA-binding24.18.1e-08123174447
                      S-HHHH........HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEd........ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT+eE+         l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
     EcC025031.30 123 WTEEEHrwglllvdRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 174
                      6666652222222268999999*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.795964IPR017884SANT domain
SMARTSM007171.4E-51062IPR001005SANT/Myb domain
SuperFamilySSF466893.52E-81267IPR009057Homeodomain-like
CDDcd001672.00E-71360No hitNo description
PfamPF002491.3E-51359IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-41360IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-7113174IPR009057Homeodomain-like
PROSITE profilePS5129414.602114179IPR017930Myb domain
SuperFamilySSF466895.81E-13117180IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-13119177IPR006447Myb domain, plants
SMARTSM007171.0E-4119177IPR001005SANT/Myb domain
CDDcd001673.94E-5122175No hitNo description
PfamPF002495.6E-6136174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0051536Molecular Functioniron-sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTVDEAVSPS CSSWSKEQDK AFENALATHF EVSPDWWEKV ASDVPGKTLE EIKLHYEDLV  60
EDVNRIEAGR VPLPSYSSAC SDGSASNLGE EESGKKGGGG SGESNQGGKG SRSDQERRKG  120
IAWTEEEHRW GLLLVDRLFL LGLDKYGKGD WRSISRNFVV TRTPTQVASH AQKYFIRLSS  180
VNKDRRRSSI HDITTVGSGD LSAPQGPITG QNQTDGSAGG VSSGKSNKQS PQSPAVTSGV  240
AVSGPPPSIG QPVGGPFVSA VGTPVNLSTA PHMAYGVRGQ VQGTVVPGAP INMGSVTYPM  300
PHASAHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1514781175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031381.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN61e-108SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A059ABA10.0A0A059ABA1_EUCGR; Uncharacterized protein
STRINGXP_010031380.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-91MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]