PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC024451.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 735aa MW: 83290.1 Da PI: 7.0934

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC024451.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	358.4	1.1e-109	359	732	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+avs+ d++ a++lL ++++ +sp+gd qR+a+yf+ +L+arla+ + + ++a++ s ++++ ++++ a++l + ++P+ +f+ l EcC024451.10 359 LRSLLTLCAQAVSTYDFKTARELLRQIRQDSSPTGDGSQRIAHYFADGLEARLAG-SIGRSQAFHYSVIEKRSLADKVRAYQLHYSTCPFTRFQILF 454 6899*************************************************.55556678888888889******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N +Il+++e+e+ +Hi+Df+i+ G+QWp L+q+L++R++g +lRiTg++ p+sg +e++e tg+rLak++++++vpfef+++++ ++e++++ EcC024451.10 455 SNYMILKSAETEKVLHIVDFGINFGFQWPILIQELSKRARGITKLRITGIEFPQSGfrPAERIEGTGRRLAKYCKRFHVPFEFQAVASASWECIRVA 551 ***************************************************9*************************9999**** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L++++gE++aVn+ + ++l+de+ +++ +rd vL+l+ks++P+v+v+ ++ ++n++ F +rf eal ++s+++d++++++ +++ +r ++Er + EcC024451.10 552 DLKIQKGEVVAVNCLSRFEYLYDETIEVNCQRDMVLSLIKSMKPHVFVHGIRNGSYNTPFFITRFREALFHFSTMYDMFNTTVDPANAQRLVLERDF 648 ********************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +grei+n+vaceg er+er et+++W+ rl+++GF+++pl+++ k+a++ l+ + + ++++ee+++++l W++r + +++W EcC024451.10 649 FGREIMNIVACEGLERVERPETYKQWQVRLNRVGFQQLPLDQELIKKARAKLSGDYHKDFMLDEENNWILLSWRGRIISGCTCW 732 *************************************************999888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.609	333	713	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-107	359	732	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MTSLPRQPEL KYNGPSLPIN LDGDLVLPST NKRPNLGMIC CSTSSSESPN KGEESLSLSV 60 HSNSTEPVLK HINQMLMEEN MEEQPWVIPN IVALRHMEKS LYDALGKKYP DSPEQTEQVD 120 TNPVINSSSW SPWGSSGGQG SKGTTSTSSN SFHPLDLDTH DDLEGNNYAF IHAKSPGDVV 180 LQSNADGKFQ SPINSVNCLP KYGDKFYYSV PSELLIGHIF NNNESVLQFN RGLEEARKFI 240 PSSIHINKEK EGLAPTIREK EEIGINGTNQ SENGSRGRKN HERHYAIFEE GRATKQLASD 300 NEDHELSDLL EKLLLSNKNG GLLSLECKLE KSIETKDLHG PNGTGDHSKK KGYESTSDLR 360 SLLTLCAQAV STYDFKTARE LLRQIRQDSS PTGDGSQRIA HYFADGLEAR LAGSIGRSQA 420 FHYSVIEKRS LADKVRAYQL HYSTCPFTRF QILFSNYMIL KSAETEKVLH IVDFGINFGF 480 QWPILIQELS KRARGITKLR ITGIEFPQSG FRPAERIEGT GRRLAKYCKR FHVPFEFQAV 540 ASASWECIRV ADLKIQKGEV VAVNCLSRFE YLYDETIEVN CQRDMVLSLI KSMKPHVFVH 600 GIRNGSYNTP FFITRFREAL FHFSTMYDMF NTTVDPANAQ RLVLERDFFG REIMNIVACE 660 GLERVERPET YKQWQVRLNR VGFQQLPLDQ ELIKKARAKL SGDYHKDFML DEENNWILLS 720 WRGRIISGCT CWVSP

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MTSLPRQPEL KYNGPSLPIN LDGDLVLPST NKRPNLGMIC CSTSSSESPN KGEESLSLSV  60
HSNSTEPVLK HINQMLMEEN MEEQPWVIPN IVALRHMEKS LYDALGKKYP DSPEQTEQVD  120
TNPVINSSSW SPWGSSGGQG SKGTTSTSSN SFHPLDLDTH DDLEGNNYAF IHAKSPGDVV  180
LQSNADGKFQ SPINSVNCLP KYGDKFYYSV PSELLIGHIF NNNESVLQFN RGLEEARKFI  240
PSSIHINKEK EGLAPTIREK EEIGINGTNQ SENGSRGRKN HERHYAIFEE GRATKQLASD  300
NEDHELSDLL EKLLLSNKNG GLLSLECKLE KSIETKDLHG PNGTGDHSKK KGYESTSDLR  360
SLLTLCAQAV STYDFKTARE LLRQIRQDSS PTGDGSQRIA HYFADGLEAR LAGSIGRSQA  420
FHYSVIEKRS LADKVRAYQL HYSTCPFTRF QILFSNYMIL KSAETEKVLH IVDFGINFGF  480
QWPILIQELS KRARGITKLR ITGIEFPQSG FRPAERIEGT GRRLAKYCKR FHVPFEFQAV  540
ASASWECIRV ADLKIQKGEV VAVNCLSRFE YLYDETIEVN CQRDMVLSLI KSMKPHVFVH  600
GIRNGSYNTP FFITRFREAL FHFSTMYDMF NTTVDPANAQ RLVLERDFFG REIMNIVACE  660
GLERVERPET YKQWQVRLNR VGFQQLPLDQ ELIKKARAKL SGDYHKDFML DEENNWILLS  720
WRGRIISGCT CWVSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-42	355	732	1	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018724293.1	0.0	PREDICTED: scarecrow-like protein 34 isoform X1
TrEMBL	A0A059D4Y1	0.0	A0A059D4Y1_EUCGR; Uncharacterized protein
STRING	XP_010043523.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM34273	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	1e-164	GRAS family protein