PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC024166.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 248aa MW: 27829.4 Da PI: 7.1142

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC024166.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.2	1.3e-31	12	66	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFv aveqLGG+++AtPk il++m+ + Lt++h+kSHLQkYR+ EcC024166.20 12 KERLRWTQELHDRFVAAVEQLGGADRATPKGILKAMDYDRLTIYHIKSHLQKYRM 66 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.723	9	69	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-30	10	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-17	11	66	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-25	12	66	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-8	14	65	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-10	97	143	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGLSRGSHGS GKERLRWTQE LHDRFVAAVE QLGGADRATP KGILKAMDYD RLTIYHIKSH 60 LQKYRMSTLI SEKPPKKFER PSISEIFPNF SATCGAQLKE VIRQAQMNYQ ALLSDQDEVQ 120 KNLRLKIEAQ GRYFQRMMDE HQNVRPLTVG TRPNKPSVPS VSLPSLSEES ESHVKEADSD 180 SEGPEEILTR VPKRPRTSLD CDSSPNICNY SAIVARDADS DPPYDLGDIS FLWNLASCPS 240 PVLVPSSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-21	11	67	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-21	11	67	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-21	11	67	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-21	11	67	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-21	11	67	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-21	11	67	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-21	11	67	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-21	11	67	1	57	Protein PHOSPHATE STARVATION RESPONSE 1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	197	PKRPRTS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010065660.1	1e-132	PREDICTED: myb family transcription factor PHL7
STRING	XP_010065660.1	1e-132	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16802	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-39	G2-like family protein