PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC023963.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 342aa MW: 37301.8 Da PI: 5.1381

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC023963.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	1.9e-09	191	238	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a++L + +++++sLq EcC023963.10 191 SHSLAERARREKINARMKLLQELVPGC----SKISGTASVLDEIINHVQSLQ 238 8***********************9....788999************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-15	185	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.73E-10	185	242	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.4E-15	187	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.053	187	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-7	191	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-9	193	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEPSSLTLDG STDAALESVL TEEIRSLMAP PPESTSSFTA LLELPRTRAI ELLHSPEAPN 60 SPGVAVPGGP AGPPLRRLGG DGGGGFALAV GSDLAAKYPA LFGEKNDSLE TSSQKVKSEP 120 LTESDSNPNS SPQPLVSDPT VENKGQRPTK RKDREKKAKA SAKKSKNESS EDAEELPYVH 180 VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCSKI SGTASVLDEI INHVQSLQRQ 240 VELLSMRLAA ANPRVDFNMD NIFAENMSLV DSNFPSMVMP FMWPEVQVNE SRQPYHQQWQ 300 FNSLPQPVWG MEQDNHNFIT PENSLLSYDS PANSGSVCCP FL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEPSSLTLDG STDAALESVL TEEIRSLMAP PPESTSSFTA LLELPRTRAI ELLHSPEAPN  60
SPGVAVPGGP AGPPLRRLGG DGGGGFALAV GSDLAAKYPA LFGEKNDSLE TSSQKVKSEP  120
LTESDSNPNS SPQPLVSDPT VENKGQRPTK RKDREKKAKA SAKKSKNESS EDAEELPYVH  180
VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCSKI SGTASVLDEI INHVQSLQRQ  240
VELLSMRLAA ANPRVDFNMD NIFAENMSLV DSNFPSMVMP FMWPEVQVNE SRQPYHQQWQ  300
FNSLPQPVWG MEQDNHNFIT PENSLLSYDS PANSGSVCCP FL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057670.1	0.0	PREDICTED: transcription factor bHLH48 isoform X2
Swissprot	Q3EAI1	7e-74	BH060_ARATH; Transcription factor bHLH60
Swissprot	Q8VZ02	1e-74	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A059DHK7	0.0	A0A059DHK7_EUCGR; Uncharacterized protein
STRING	XP_010057666.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-72	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]