PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC023819.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 109aa    MW: 12106.7 Da    PI: 9.7311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC023819.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.2e-132875355
           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+   ++  +Wv+eIr+p     + +r++lg++ t+e+A +a++ a+++l+g
  EcC023819.10 28 YRGI--LSRGRKWVSEIREPH----KsTRIWLGTYPTPEMAVAAYDVAALALKG 75
                  7777..344567*******62....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.7671783IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-232784IPR001471AP2/ERF domain
SMARTSM003809.3E-202789IPR001471AP2/ERF domain
PfamPF008476.2E-72875IPR001471AP2/ERF domain
CDDcd000181.13E-222885No hitNo description
SuperFamilySSF541715.89E-172885IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
TMDQHSLPAD ASRSPACHPP VSRRHPEYRG ILSRGRKWVS EIREPHKSTR IWLGTYPTPE  60
MAVAAYDVAA LALKGPGALL NFPSSVLTYP IPPSTSPSDI REKYNPYHS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038425.14e-53PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9LYD34e-26DREB3_ARATH; Dehydration-responsive element-binding protein 3
SwissprotQ9SJR09e-27ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A058ZX418e-44A0A058ZX41_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010038425.11e-52(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-20ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]