PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC023187.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GATA

Protein Properties

Length: 528aa MW: 58766.3 Da PI: 7.2818

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC023187.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	34.8	2.3e-11	1	27	9	35
GATA 9 TplWRrgpdgnktLCnaCGlyyrkkgl 35 TplWR+gp ++ LCnaCG ++r kg+ EcC023187.10 1 TPLWRNGPPEKPVLCNACGSRWRTKGT 27 9*****88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	1.3E-7	1	27	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.28E-5	1	32	No hit	No description
SMART	SM00401	0.0048	1	41	IPR000679	Zinc finger, GATA-type
CDD	cd00202	4.40E-11	1	41	No hit	No description
Pfam	PF00320	4.2E-9	1	27	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
TPLWRNGPPE KPVLCNACGS RWRTKGTLAN YTPLHSRADP ENYEDHRVAR TKSMSVNKKK 60 EVKVLKRKYD SENTTVRGNS HEYSQSFHKF ADDDTSNWSS SGSALSNSES CAQFGSADAS 120 DLTGQAQSVV WDSLVPSRKR TCVNRPKPSA VEKLARDLHT ILHEQQSSCL SGSSEEDLLL 180 ESETPMVSVE IGHGSVLIRH PSSIAREEES EASSLSVDNK QLKINDVHSH PLTIPVHNNK 240 CVNLPSSKAQ TLESPFGQGK EQGQLKRDKS QHEKLRMXXX XXXXXXXXXX XDVLNFDQFV 300 KYLTYEEQQQ LLKYLPQVDR ANFPDSLRSM FDGAAFLENL SSFQHLLAEG LFDASLSVAK 360 EEDYKTLRRL VLSDLIKCKW VEHFHQVKKC KGGSVKPSSQ GGRETVSSNL IKGNGLHDIQ 420 KQKYTDVNAK MKSPRRIIMG GSSRNKEIAE SDGSCFSPRS LFAVPPDGGA LLLDSLHVTD 480 DNSEQDLLLD VPSNSSFPQA ELLHPAMSFV SQQASTSSSS LYPQLVYP

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

TPLWRNGPPE KPVLCNACGS RWRTKGTLAN YTPLHSRADP ENYEDHRVAR TKSMSVNKKK  60
EVKVLKRKYD SENTTVRGNS HEYSQSFHKF ADDDTSNWSS SGSALSNSES CAQFGSADAS  120
DLTGQAQSVV WDSLVPSRKR TCVNRPKPSA VEKLARDLHT ILHEQQSSCL SGSSEEDLLL  180
ESETPMVSVE IGHGSVLIRH PSSIAREEES EASSLSVDNK QLKINDVHSH PLTIPVHNNK  240
CVNLPSSKAQ TLESPFGQGK EQGQLKRDKS QHEKLRMXXX XXXXXXXXXX XDVLNFDQFV  300
KYLTYEEQQQ LLKYLPQVDR ANFPDSLRSM FDGAAFLENL SSFQHLLAEG LFDASLSVAK  360
EEDYKTLRRL VLSDLIKCKW VEHFHQVKKC KGGSVKPSSQ GGRETVSSNL IKGNGLHDIQ  420
KQKYTDVNAK MKSPRRIIMG GSSRNKEIAE SDGSCFSPRS LFAVPPDGGA LLLDSLHVTD  480
DNSEQDLLLD VPSNSSFPQA ELLHPAMSFV SQQASTSSSS LYPQLVYP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010055425.1	0.0	PREDICTED: GATA transcription factor 26
TrEMBL	A0A059C1W4	0.0	A0A059C1W4_EUCGR; Uncharacterized protein
STRING	XP_010055425.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1606	27	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-106	GATA transcription factor 26