PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC022864.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 640aa    MW: 71760.4 Da    PI: 5.3707
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC022864.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.57.3e-1122666371374
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL+ cA+av+ +d   a +lL++++ +asp+gd mqR+a+yf+++L+arla+s+s+++kal +++ s    +++l+a++l+  v+P++k+sh  
  EcC022864.20 266 LRTLLTLCAQAVTMDDRGSAGELLKQIRRHASPTGDGMQRMAHYFANGLEARLAGSGSQIFKALMARPRS---AVDVLKAYHLLLTVCPFMKLSHYF 359
                   5789***************************************************************999...9*********************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    N++Il+ + ++ ++HiiDf+i +G+QWp L++ L+s p+gpp+lRiT ++ p++g    e +eetg+rL ++A++++vpf+fn+ ++k ++++++e
  EcC022864.20 360 SNKTILNVAREAPKLHIIDFGILYGFQWPGLIERLSSSPSGPPELRITLIDLPQPGfkPYEIVEETGRRLVSYAKTFNVPFKFNA-IVKGWDAIKVE 455
                   *******************************************************9999999***********************.7********** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   eL+++++E l+Vn++++ h++ld++v  es+rd vL+l+k+++P+v++++  + +h+ + F+ rf eal ++sa+fd l+a++pr++ er  +E+e+
  EcC022864.20 456 ELNIHSDEILVVNCIHRFHNILDDTVLAESPRDVVLNLIKKMNPDVFIHAVVNGNHGVPFFVSRFREALFHFSAVFDILDATVPRDDPERLLLEQEI 552
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   lg++++nv+aceg++r+er et+++ + r  +aGF+++pl++++++ ak  l+ ++ + +++ee+ ++l++gWk+r ++++S Wr
  EcC022864.20 553 LGKQAMNVIACEGSDRIERPETYKSSHVRNLRAGFRQLPLDKDVVSLAKDKLKSCYHKDFEIEEDGQWLLQGWKGRIIYALSTWR 637
                   ********************************************************889*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.688240617IPR005202Transcription factor GRAS
PfamPF035142.5E-109266637IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MLMEEDIEEK SVACHEASAI EAAEKSFYEV IGERYPPAAD QYPSPSQTNE SSCGGSDSVI  60
KLVESEPNYE SEEHTVLTTV SQSISSSVAQ SLDDVRVGIS TAGHAESPVN AIALSELIGS  120
ESVMQFKGNS EETRESLAFG NEILVDPERG EFSFNEQTEE PTSLVPNEET DENMFANLGG  180
NRGKKNPLQE DVNLEVGRMS KYLSVYTEST VRSEIFDMVL LNPKESEATL REALRNMMQN  240
GKSKVPNERK AHGKKQGRRK RDVVDLRTLL TLCAQAVTMD DRGSAGELLK QIRRHASPTG  300
DGMQRMAHYF ANGLEARLAG SGSQIFKALM ARPRSAVDVL KAYHLLLTVC PFMKLSHYFS  360
NKTILNVARE APKLHIIDFG ILYGFQWPGL IERLSSSPSG PPELRITLID LPQPGFKPYE  420
IVEETGRRLV SYAKTFNVPF KFNAIVKGWD AIKVEELNIH SDEILVVNCI HRFHNILDDT  480
VLAESPRDVV LNLIKKMNPD VFIHAVVNGN HGVPFFVSRF REALFHFSAV FDILDATVPR  540
DDPERLLLEQ EILGKQAMNV IACEGSDRIE RPETYKSSHV RNLRAGFRQL PLDKDVVSLA  600
KDKLKSCYHK DFEIEEDGQW LLQGWKGRII YALSTWRPDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4627363826380Protein SCARECROW
5b3h_A2e-4627363825379Protein SCARECROW
5b3h_D2e-4627363825379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032388.10.0PREDICTED: scarecrow-like protein 9 isoform X1
TrEMBLA0A059ACH20.0A0A059ACH2_EUCGR; Uncharacterized protein
STRINGXP_010032388.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein