PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC022864.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 640aa MW: 71760.4 Da PI: 5.3707 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 365.5 | 7.3e-112 | 266 | 637 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+av+ +d a +lL++++ +asp+gd mqR+a+yf+++L+arla+s+s+++kal +++ s +++l+a++l+ v+P++k+sh EcC022864.20 266 LRTLLTLCAQAVTMDDRGSAGELLKQIRRHASPTGDGMQRMAHYFANGLEARLAGSGSQIFKALMARPRS---AVDVLKAYHLLLTVCPFMKLSHYF 359 5789***************************************************************999...9*********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N++Il+ + ++ ++HiiDf+i +G+QWp L++ L+s p+gpp+lRiT ++ p++g e +eetg+rL ++A++++vpf+fn+ ++k ++++++e EcC022864.20 360 SNKTILNVAREAPKLHIIDFGILYGFQWPGLIERLSSSPSGPPELRITLIDLPQPGfkPYEIVEETGRRLVSYAKTFNVPFKFNA-IVKGWDAIKVE 455 *******************************************************9999999***********************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 eL+++++E l+Vn++++ h++ld++v es+rd vL+l+k+++P+v++++ + +h+ + F+ rf eal ++sa+fd l+a++pr++ er +E+e+ EcC022864.20 456 ELNIHSDEILVVNCIHRFHNILDDTVLAESPRDVVLNLIKKMNPDVFIHAVVNGNHGVPFFVSRFREALFHFSAVFDILDATVPRDDPERLLLEQEI 552 ************************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 lg++++nv+aceg++r+er et+++ + r +aGF+++pl++++++ ak l+ ++ + +++ee+ ++l++gWk+r ++++S Wr EcC022864.20 553 LGKQAMNVIACEGSDRIERPETYKSSHVRNLRAGFRQLPLDKDVVSLAKDKLKSCYHKDFEIEEDGQWLLQGWKGRIIYALSTWR 637 ********************************************************889*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.688 | 240 | 617 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-109 | 266 | 637 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MLMEEDIEEK SVACHEASAI EAAEKSFYEV IGERYPPAAD QYPSPSQTNE SSCGGSDSVI 60 KLVESEPNYE SEEHTVLTTV SQSISSSVAQ SLDDVRVGIS TAGHAESPVN AIALSELIGS 120 ESVMQFKGNS EETRESLAFG NEILVDPERG EFSFNEQTEE PTSLVPNEET DENMFANLGG 180 NRGKKNPLQE DVNLEVGRMS KYLSVYTEST VRSEIFDMVL LNPKESEATL REALRNMMQN 240 GKSKVPNERK AHGKKQGRRK RDVVDLRTLL TLCAQAVTMD DRGSAGELLK QIRRHASPTG 300 DGMQRMAHYF ANGLEARLAG SGSQIFKALM ARPRSAVDVL KAYHLLLTVC PFMKLSHYFS 360 NKTILNVARE APKLHIIDFG ILYGFQWPGL IERLSSSPSG PPELRITLID LPQPGFKPYE 420 IVEETGRRLV SYAKTFNVPF KFNAIVKGWD AIKVEELNIH SDEILVVNCI HRFHNILDDT 480 VLAESPRDVV LNLIKKMNPD VFIHAVVNGN HGVPFFVSRF REALFHFSAV FDILDATVPR 540 DDPERLLLEQ EILGKQAMNV IACEGSDRIE RPETYKSSHV RNLRAGFRQL PLDKDVVSLA 600 KDKLKSCYHK DFEIEEDGQW LLQGWKGRII YALSTWRPDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-46 | 273 | 638 | 26 | 380 | Protein SCARECROW |
5b3h_A | 2e-46 | 273 | 638 | 25 | 379 | Protein SCARECROW |
5b3h_D | 2e-46 | 273 | 638 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010032388.1 | 0.0 | PREDICTED: scarecrow-like protein 9 isoform X1 | ||||
TrEMBL | A0A059ACH2 | 0.0 | A0A059ACH2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010032388.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |