PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC022718.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 92aa    MW: 10517.3 Da    PI: 10.0197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC022718.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84e-136881798
                  E--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  ++p  f++++ +++ + + tl++     r+W+vkl++  + +s++    +++GW +F+++n L++gD+++F+l++ +   l+v++fr
  EcC022718.20  6 IVPAGFVRRYlEHS-HLKGTLRV---GHRTWSVKLRIypQPNSNSlkGKISAGWFNFARDNALQVGDICIFELIDPDLIVLKVSIFR 88
                  57888888885433.33335554...44*******8857333333336677**********************98777778888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.674190IPR003340B3 DNA binding domain
SMARTSM010191.5E-5390IPR003340B3 DNA binding domain
CDDcd100171.12E-16388No hitNo description
SuperFamilySSF1019361.31E-14490IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-14588IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-11688IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MVCSQIVPAG FVRRYLEHSH LKGTLRVGHR TWSVKLRIYP QPNSNSLKGK ISAGWFNFAR  60
DNALQVGDIC IFELIDPDLI VLKVSIFRYS ID
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041489.12e-56PREDICTED: B3 domain-containing protein REM19-like
TrEMBLA0A067LCJ84e-17A0A067LCJ8_JATCU; Uncharacterized protein
TrEMBLA0A2N9JCA95e-17A0A2N9JCA9_FAGSY; Uncharacterized protein
STRINGXP_010041489.16e-56(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-12related to vernalization1 1