PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC022224.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 322aa    MW: 35000.1 Da    PI: 7.7018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC022224.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19117167256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  EcC022224.30 117 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 167
                   59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.70E-17116176No hitNo description
SMARTSM003801.1E-36117180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-31117175IPR001471AP2/ERF domain
PROSITE profilePS5103223.301117174IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22117174IPR016177DNA-binding domain
PRINTSPR003674.1E-10118129IPR001471AP2/ERF domain
PfamPF008473.2E-13118167IPR001471AP2/ERF domain
PRINTSPR003674.1E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEMIQQDQNS FSQNNTDIGS SLSQLILAGG SSTIDSIFSL CSSTSQTPTP APTALPSTIT  60
SPSVFEPLGS SVYLLQRDLL HKFTQRNGSS SNFSYTSTPL RTSVFSTAYP SPCKKKLYRG  120
VRQRHWGKWV AEIRLPQNRM RVWLGTYDTA EAAAYAYDRA AYKLRGEYAR LNFPNLKDPS  180
KLGFGDGSRL NALKSSVDAK IQAICQKVKR ERAKKSAKNS SGSSNGGVGG KSESEKVTKV  240
DSSCSSSTLS PPSPLFLGEE DWTSELMASD VSEDGFWKCE NSQPSCSVDG SAIVAEESES  300
EGCSLAKMPS FDPELIWEVL AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20116174160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20114174263ATERF1
3gcc_A2e-20114174263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055858.10.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-73ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A059C2I90.0A0A059C2I9_EUCGR; Uncharacterized protein
STRINGXP_010055858.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-57ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]