PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC022141.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 71aa    MW: 8094.25 Da    PI: 4.5639
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC022141.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind25.92.6e-083770235
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHH CS
  HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvldeee 35
                  Fl+k+y +++d+++++lisw+++g++f+ +   e
  EcC022141.10 37 FLMKTYMLMNDPSVDDLISWNKDGTTFIAWRLAE 70
                  9***************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-73069IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.1E-63567IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.0E-53767IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
LRVSWGLEFE RHPWGPMPAE QTGDSPVVGA SQRSLPFLMK TYMLMNDPSV DDLISWNKDG  60
TTFIAWRLAE L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055608.23e-21PREDICTED: heat stress transcription factor B-2b
TrEMBLA0A059C1N57e-20A0A059C1N5_EUCGR; Uncharacterized protein
STRINGXP_010055608.12e-20(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-14HSF family protein