PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC022004.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 26993.9 Da PI: 9.4763 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.8 | 8.5e-57 | 35 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+++yL++kv + ++++ +++ evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+ + + EcC022004.10 35 LPPGFRFHPTDEELITHYLTPKVLDGSFRA-RAMGEVDLNKCEPWDLPGQAKMGEKEWYFFCVRDRKYPTGMRTNRATEAGYWKATGKDKEIRR-MK 129 79***************************9.89***************999999***************************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLvfy+grap+g+kt+Wvmhe+rl EcC022004.10 130 KVVGMKKTLVFYRGRAPNGQKTNWVMHEFRL 160 99***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-65 | 26 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.747 | 35 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-30 | 36 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDRIGREVQP KKQLACFYVK SSTTMIFEGD EQMELPPGFR FHPTDEELIT HYLTPKVLDG 60 SFRARAMGEV DLNKCEPWDL PGQAKMGEKE WYFFCVRDRK YPTGMRTNRA TEAGYWKATG 120 KDKEIRRMKK VVGMKKTLVF YRGRAPNGQK TNWVMHEFRL GDGYYQHHLS NSQKNDWVIC 180 RIFEKRPDGK KADQPETLPG GLERLSSFDN EPKASLLPLP PLVESSPFTT TSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 32 | 191 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 32 | 191 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 32 | 191 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 32 | 191 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-55 | 32 | 191 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-55 | 32 | 191 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-55 | 32 | 191 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-55 | 32 | 191 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-55 | 32 | 191 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-55 | 32 | 191 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-55 | 32 | 191 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-55 | 32 | 191 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-55 | 32 | 191 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 32 | 191 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029310.1 | 1e-157 | PREDICTED: NAC domain-containing protein 79 | ||||
Swissprot | Q9FLJ2 | 5e-94 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A059AQT6 | 1e-156 | A0A059AQT6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029310.1 | 1e-157 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 2e-93 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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