PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC021760.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 152aa MW: 16969.7 Da PI: 10.4302 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.1 | 2.1e-10 | 36 | 125 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+v ++s++l ++++++p ++eh +g s++ t ++ sW vkl + g l++GW F + LkegD+++Fkl++ ++ el+v EcC021760.30 36 FTVVIRSHNLLKQNVTVPGGILREHiNG----SMQTTTLKYTNGSWPVKLLCYPQHGLGNLSAGWALFHRGTSLKEGDVCLFKLVRIDNIELKV 125 56788999999999***********532....333444445668******665555556799*********************98766665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.1E-12 | 30 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-12 | 31 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.01E-10 | 34 | 126 | No hit | No description |
PROSITE profile | PS50863 | 9.136 | 35 | 129 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-8 | 36 | 123 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.005 | 36 | 129 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009231 | Biological Process | riboflavin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004523 | Molecular Function | RNA-DNA hybrid ribonuclease activity | ||||
GO:0008686 | Molecular Function | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
VSPAMLASRS STSKRSKTVT TALKGANKDE LQCPSFTVVI RSHNLLKQNV TVPGGILREH 60 INGSMQTTTL KYTNGSWPVK LLCYPQHGLG NLSAGWALFH RGTSLKEGDV CLFKLVRIDN 120 IELKVSNSEG MSRFRCKLWY TYRKIYASLC FV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018724504.1 | 5e-68 | PREDICTED: B3 domain-containing protein REM19-like | ||||
TrEMBL | A0A059D7B1 | 1e-66 | A0A059D7B1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010046516.1 | 4e-46 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-11 | B3 family protein |