PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC020797.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 268aa    MW: 30347.7 Da    PI: 4.9888
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC020797.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-174085148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg +T eE+e++  ++++ G++ W+ Ia++++ gRt++++k++w++yl
     EcC020797.10 40 RGMFTMEEEEIIFSLHHLIGNK-WSQIAKHLP-GRTDNEIKNHWHSYL 85
                     788*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.2051334IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.0E-101646IPR009057Homeodomain-like
SuperFamilySSF466892.0E-242089IPR009057Homeodomain-like
PROSITE profilePS5129426.1963589IPR017930Myb domain
SMARTSM007176.3E-143987IPR001005SANT/Myb domain
PfamPF002499.8E-164085IPR001005SANT/Myb domain
CDDcd001677.36E-124385No hitNo description
Gene3DG3DSA:1.10.10.607.1E-224786IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MLESCMYMVC DYIFERAGLQ RNGKSCRLRW INYLRPGLKR GMFTMEEEEI IFSLHHLIGN  60
KWSQIAKHLP GRTDNEIKNH WHSYLKKKVA NKIESLSSSL EAHHHARSQC TNSDNVESSP  120
PPDQIPPNQN PSVHAPSQEQ KEKTSFDFQR DGLRSFLPQI FFAEWLNQAD QGNNIPNYGD  180
AFDDCLNLQD PLVHDLCTTD FGNSYGGEYV GSELSNGSAS ASVSDMYSSQ LKLEMDQVSG  240
GGYFLDYFSG GDICSQFDMG NDVNVMYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-22218940108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035125.11e-159PREDICTED: transcription factor LAF1
TrEMBLA0A058ZXB91e-158A0A058ZXB9_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010035125.11e-159(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-37myb domain protein 18