PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC020558.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 370aa    MW: 40913 Da    PI: 9.7125
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC020558.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-173685155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  EcC020558.10 36 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 85
                  78*******************......55************************998 PP
2AP241.72.9e-13128178155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  EcC020558.10 128 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 178
                   89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-163694IPR016177DNA-binding domain
PfamPF008471.5E-93685IPR001471AP2/ERF domain
PROSITE profilePS5103217.823793IPR001471AP2/ERF domain
SMARTSM003801.4E-313799IPR001471AP2/ERF domain
CDDcd000183.41E-113795No hitNo description
Gene3DG3DSA:3.30.730.102.6E-173794IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-17128187IPR016177DNA-binding domain
CDDcd000181.02E-25128188No hitNo description
PfamPF008478.6E-9128178IPR001471AP2/ERF domain
PROSITE profilePS5103215.527129186IPR001471AP2/ERF domain
SMARTSM003801.8E-32129192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-16129186IPR001471AP2/ERF domain
PRINTSPR003673.3E-6130141IPR001471AP2/ERF domain
PRINTSPR003673.3E-6168188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
RSDVFLVGAC KDKEGPRLAM PQQRRKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  60
VYLGGFDTAH AAARAYDRAA IKFRGLDADI NFNLSDYEDD FKQMKNLSKE EFVHILRRQS  120
TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE  180
AVTNFEPSTY DGEMIAKASN ENSIYGDHGL DLNLGISASS RGMVETLEPS DDMRQGSSLR  240
VRNSAASWGD PSVEGLSMTS GQPPPWTGVY PSVFPCMERA KEKICGLGLS KGLATWATQM  300
HGQVNSAPLP LLSAAASSGF SMSAAHRSPV IPPPILTDST SQSNRFTSPS SAVNNISCGY  360
YQLTPQWPPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12228QRRKSRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033195.10.0PREDICTED: floral homeotic protein APETALA 2 isoform X1
SwissprotQ8H4431e-105AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A059AHA60.0A0A059AHA6_EUCGR; Uncharacterized protein
STRINGXP_010033195.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-99AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]