PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC020246.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 497aa MW: 54214.3 Da PI: 8.7689

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC020246.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.4e-30	214	273	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ EcC020246.20 214 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILVTTYEGTHNHP 273 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-31	199	275	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-27	207	275	IPR003657	WRKY domain
PROSITE profile	PS50811	28.369	209	275	IPR003657	WRKY domain
SMART	SM00774	2.3E-36	214	274	IPR003657	WRKY domain
Pfam	PF03106	1.1E-26	215	273	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0015074	Biological Process	DNA integration
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MPPKESENSK PSSPNQMISS PRRKEDQHQL ESARAEMSQV REENQKLKMY LNQIMRDYRT 60 LQMKFFDAVK QEDDNKKSAN ATKGSCREID QESDELVSLS LGRATSDSKK LSLEDKNKSL 120 AQVKDNTNDH KFEQGLGFGL DYKLELLKSG TTESLSNPSP DTSIEEAKEE AGETWPPGKV 180 KKAMRTSSDD EVSQQNPVKK ARVSVRARCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC 240 TVAPSCPVRK QVQRCAEDMS ILVTTYEGTH NHPLPMSATA MASTTSAAAH MLLSGSSTSQ 300 NISSHGSSSL SMAPMAANLQ GLSFYQSEAS KARSPFYLPT TSFASSSTPT ITLDLTSNPL 360 SSSSSSSLFN RFPLQYPSTR FSSTSLSFNN SFESSALPLP WGSSNGGLMN YNTSQLFNKN 420 QALDLAKQAQ ESYHQSYTQK NMSSLPQQAL PESIAAATKA ITADPSFQSA LAAALKSIIG 480 NGGGGNSNQG GVDHFRN

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MPPKESENSK PSSPNQMISS PRRKEDQHQL ESARAEMSQV REENQKLKMY LNQIMRDYRT  60
LQMKFFDAVK QEDDNKKSAN ATKGSCREID QESDELVSLS LGRATSDSKK LSLEDKNKSL  120
AQVKDNTNDH KFEQGLGFGL DYKLELLKSG TTESLSNPSP DTSIEEAKEE AGETWPPGKV  180
KKAMRTSSDD EVSQQNPVKK ARVSVRARCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC  240
TVAPSCPVRK QVQRCAEDMS ILVTTYEGTH NHPLPMSATA MASTTSAAAH MLLSGSSTSQ  300
NISSHGSSSL SMAPMAANLQ GLSFYQSEAS KARSPFYLPT TSFASSSTPT ITLDLTSNPL  360
SSSSSSSLFN RFPLQYPSTR FSSTSLSFNN SFESSALPLP WGSSNGGLMN YNTSQLFNKN  420
QALDLAKQAQ ESYHQSYTQK NMSSLPQQAL PESIAAATKA ITADPSFQSA LAAALKSIIG  480
NGGGGNSNQG GVDHFRN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	201	275	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037154.1	0.0	PREDICTED: probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-121	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A059A3W5	0.0	A0A059A3W5_EUCGR; Uncharacterized protein
STRING	XP_010037154.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	8e-75	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]