PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC019691.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 26929 Da PI: 6.0545 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 6.1e-18 | 96 | 146 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + + r++lg+f+++e Aa a+++a+ +++g EcC019691.50 96 SYRGVRKRP-WGKYAAEIRDSTR---HgIRVWLGTFDSPEAAAMAYDQAAFSMRG 146 69*******.**********422...25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.44E-19 | 95 | 155 | No hit | No description |
Pfam | PF00847 | 6.4E-13 | 96 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 96 | 155 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.695 | 96 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-37 | 96 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-22 | 96 | 156 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.0E-13 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-13 | 136 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MQSCFFQYQT QEISTESSLN CGVFNHDMLP FNFNDSEEML LLNLLATTGV KESSESLSSN 60 GSKFKEEEVT SSTCSTDDSQ QPRQEVNANH QEKEKSYRGV RKRPWGKYAA EIRDSTRHGI 120 RVWLGTFDSP EAAAMAYDQA AFSMRGSMAV LNFPVERVRE SLREMKYSCE EGCSPVVALK 180 RRHCLRRKSA SSAAAARKRR EKEVAAPASN LVVFEDLGPE YLEELLSTSE SNGSPASSHW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-28 | 81 | 156 | 3 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 199 | RRKSASSAAAARKRR |
2 | 196 | 201 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037983.1 | 1e-176 | PREDICTED: ethylene-responsive transcription factor 1B | ||||
Swissprot | A0A3Q7I5Y9 | 4e-69 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A059A8T4 | 1e-175 | A0A059A8T4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037983.1 | 1e-176 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 4e-57 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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