PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC019605.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 760aa MW: 85844.6 Da PI: 5.9105

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC019605.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	353.1	4.4e-108	391	760	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+avss+d + a+ +L++++++asp gd qRla+yf+++L+arl +++s++y+al +++ts ++ l+a++l ++P+ k++ + EcC019605.10 391 LRTLLILCAQAVSSDDRRTADDYLKQIRQHASPFGDGSQRLAHYFANGLEARLGGTGSQIYAALDSKKTS---AVDILKAHHLCRMACPFQKMAIVF 484 5789***********************************************************99999...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 aN +I++ +e+++++HiiDf+i +G+QWp + L+ R++gpp+lRiTg++ p+ g +e+++ tg+ Lak++++++vpfe+n +a++++++++ EcC019605.10 485 ANYMIMDLAEKATTLHIIDFGILYGFQWPVVIFLLSRRTGGPPKLRITGIEFPQRGfrPAERVQVTGRHLAKLCKQFNVPFEYNG-IAQEWDTIKIG 580 ***************************************************9*************************.7****** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L++++gE+++Vn +++ ++llde+v l+++rd+vL+l+++++P+++v + + + + + F++rf eal +ysalfd+++++l r ++ r ++E+e+ EcC019605.10 581 DLKIRNGETIVVNTMFRFKNLLDETVVLNNPRDSVLNLIRKIRPHLFVQAIVNGSFSVPFFVTRFREALFHYSALFDAFDTNLERYNRMRLTYEKEF 677 ********************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +gre+ nv+aceg+er+er et+++W+ r ++aGFk++pl +k+ ++ l ++++d + v+e+ +++++gWk+r L + S+W EcC019605.10 678 FGREAINVIACEGTERVERPETYKQWQIRNKRAGFKQLPLAPALMKKLRSKLGEFPDD-FVVDEDGHWMLQGWKGRILRASSCW 760 ****************************************************66.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.565	365	742	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-105	391	760	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MEPRVTGFSG SPSALMFDNE TLLPFPDQRA NLAYGFGRDG QSRDVGFVDK PFFPSDPRYC 60 DSAPSSLVSV EADFPSEDSD FSETVFRYIN QMLLEEDMEE KSSMSHDPLA LQAAEKSLHE 120 ALGETCPSEA TPSPPFMESP DNNYLGNSND YGKSSPSRNT GGNNFADHQW LGDFGDGRNY 180 MRRSSDIGDF IFQSTVNAHV QPSSSLPNSF LSNGNRTNAS LGSGPLFSNF LTGSQSVLQF 240 QRGVEEASKF LPKVTQLVID LEKSSENSWS KEEKSLNVVN LEEDESDLLP LGGIRGKKNH 300 QREDSEFEDE RSNKQTAVYV DDIDTELSKM MDKMLLLKIK GRSRDSYADE SSEKEVNESL 360 QQSRRTHAAD GGKFHDITPT PTSNVTEMVD LRTLLILCAQ AVSSDDRRTA DDYLKQIRQH 420 ASPFGDGSQR LAHYFANGLE ARLGGTGSQI YAALDSKKTS AVDILKAHHL CRMACPFQKM 480 AIVFANYMIM DLAEKATTLH IIDFGILYGF QWPVVIFLLS RRTGGPPKLR ITGIEFPQRG 540 FRPAERVQVT GRHLAKLCKQ FNVPFEYNGI AQEWDTIKIG DLKIRNGETI VVNTMFRFKN 600 LLDETVVLNN PRDSVLNLIR KIRPHLFVQA IVNGSFSVPF FVTRFREALF HYSALFDAFD 660 TNLERYNRMR LTYEKEFFGR EAINVIACEG TERVERPETY KQWQIRNKRA GFKQLPLAPA 720 LMKKLRSKLG EFPDDFVVDE DGHWMLQGWK GRILRASSCW

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MEPRVTGFSG SPSALMFDNE TLLPFPDQRA NLAYGFGRDG QSRDVGFVDK PFFPSDPRYC  60
DSAPSSLVSV EADFPSEDSD FSETVFRYIN QMLLEEDMEE KSSMSHDPLA LQAAEKSLHE  120
ALGETCPSEA TPSPPFMESP DNNYLGNSND YGKSSPSRNT GGNNFADHQW LGDFGDGRNY  180
MRRSSDIGDF IFQSTVNAHV QPSSSLPNSF LSNGNRTNAS LGSGPLFSNF LTGSQSVLQF  240
QRGVEEASKF LPKVTQLVID LEKSSENSWS KEEKSLNVVN LEEDESDLLP LGGIRGKKNH  300
QREDSEFEDE RSNKQTAVYV DDIDTELSKM MDKMLLLKIK GRSRDSYADE SSEKEVNESL  360
QQSRRTHAAD GGKFHDITPT PTSNVTEMVD LRTLLILCAQ AVSSDDRRTA DDYLKQIRQH  420
ASPFGDGSQR LAHYFANGLE ARLGGTGSQI YAALDSKKTS AVDILKAHHL CRMACPFQKM  480
AIVFANYMIM DLAEKATTLH IIDFGILYGF QWPVVIFLLS RRTGGPPKLR ITGIEFPQRG  540
FRPAERVQVT GRHLAKLCKQ FNVPFEYNGI AQEWDTIKIG DLKIRNGETI VVNTMFRFKN  600
LLDETVVLNN PRDSVLNLIR KIRPHLFVQA IVNGSFSVPF FVTRFREALF HYSALFDAFD  660
TNLERYNRMR LTYEKEFFGR EAINVIACEG TERVERPETY KQWQIRNKRA GFKQLPLAPA  720
LMKKLRSKLG EFPDDFVVDE DGHWMLQGWK GRILRASSCW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-46	398	760	26	378	Protein SCARECROW
5b3h_A	2e-46	398	760	25	377	Protein SCARECROW
5b3h_D	2e-46	398	760	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010033115.1	0.0	PREDICTED: scarecrow-like protein 33
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A059AFY6	0.0	A0A059AFY6_EUCGR; Uncharacterized protein
STRING	XP_010033115.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]