PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC019561.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YB
Protein Properties Length: 116aa    MW: 12591.3 Da    PI: 8.4705
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC019561.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB155.11.2e-481831395
         NF-YB 13 vsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                  +srimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfe+y+eplkvyl++yre ++
  EcC019561.80  1 ISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIEPLKVYLARYREGDT 83
                  79*****************************************************************************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.12E-34187IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.0E-45186IPR009072Histone-fold
PfamPF008081.2E-24159IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.7E-222341No hitNo description
PROSITE patternPS0068502642IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.7E-224260No hitNo description
PRINTSPR006158.7E-226179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005634Cellular Componentnucleus
GO:0005840Cellular Componentribosome
GO:0016021Cellular Componentintegral component of membrane
GO:0000166Molecular Functionnucleotide binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
ISRIMKKALP ANGKIAKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTI NGDDLLWAMA  60
TLGFEEYIEP LKVYLARYRE GDTKGSARGG DGSARKDISG GQPGQNVQVC SSVSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-401801493NF-YB
4awl_B3e-401801594NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-401801594NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067258.13e-73PREDICTED: nuclear transcription factor Y subunit B-1
SwissprotQ8VYK41e-58NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLD7TMF33e-67D7TMF3_VITVI; Uncharacterized protein
STRINGXP_010067258.11e-72(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.76e-62nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]