PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC019560.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 311aa MW: 33010.4 Da PI: 7.7083

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC019560.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.5	6.8e-31	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++ EcC019560.10 4 SCNGCRVLRKGCSESCSIRPCLqwiksPESQAHATVFLAKFYGRAGLLNLLNAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAV 100 6***********************************************************************************************9 PP DUF260 93 elall 97 e++l EcC019560.10 101 EAVLK 105 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	3.1E-96	1	303	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.643	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0005506	Molecular Function	iron ion binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	Molecular Function	heme binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKS PESQAHATVF LAKFYGRAGL LNLLNAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGVPIT PIASEAAASS 120 HAPPSKVYDI RHVSKDETAA AAADLHRVRA RCRFKRSLAK ARSSTSSASA AAAATELAPV 180 QDEPAKSSDD EPNRSTSHES SLSHQSEVIA AAAAASAEGD SKETLSAVSE ETAEPPLLFR 240 AAEREPDLAD RRPGGAEEIG LELTLGFEPV ARANHVVPVK KRRFEDCGAS SKMELGLDCS 300 AHLGGSPKSI L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010032636.1	0.0	PREDICTED: LOB domain-containing protein 40
Swissprot	Q9M886	1e-106	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A059AE02	0.0	A0A059AE02_EUCGR; Uncharacterized protein
STRING	XP_010032636.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-77	LOB domain-containing protein 41