PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC019551.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 155aa    MW: 17861.2 Da    PI: 9.121
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC019551.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.41.4e-3651312128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                   pp + FhPtdeel++++Lk+k  g++ ++   i+e+d++++eP +L++k+ +  ++ke  fF + + ky++g+r+ ratk+gyWk +g  +++++  
  EcC019551.10   5 PPVVGFHPTDEELLTHFLKRKNLGQPDDM---IPEIDVLDCEPTELHSKCGGkfGNKEFLFFYRLKPKYSKGDRSDRATKNGYWKPKGGGRTIKNGq 98 
                   78899*********************666...**************95333334788999*********************************9976 PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +ge +g k+tLvf++gr+p+ ++t+W+m eyrl
  EcC019551.10  99 DGEPIGEKTTLVFHEGRRPNEKRTSWLMYEYRL 131
                   8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-413138IPR003441NAC domain
PROSITE profilePS5100538.7354152IPR003441NAC domain
PfamPF023652.1E-195131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSSIPPVVGF HPTDEELLTH FLKRKNLGQP DDMIPEIDVL DCEPTELHSK CGGKFGNKEF  60
LFFYRLKPKY SKGDRSDRAT KNGYWKPKGG GRTIKNGQDG EPIGEKTTLV FHEGRRPNEK  120
RTSWLMYEYR LKPEHLADGH DKNKVTFHFS FSCTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-25313114140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065034.24e-40PREDICTED: NAC domain-containing protein 83
TrEMBLA0A059DB682e-44A0A059DB68_EUCGR; Uncharacterized protein
TrEMBLA0A059DBY11e-43A0A059DBY1_EUCGR; Uncharacterized protein
STRINGXP_010065034.13e-40(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1852528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.17e-33NAC domain containing protein 52