PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC019162.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 340aa MW: 38562 Da PI: 8.9534

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC019162.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.9	5e-15	85	165	15	100
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100 l +pk+f++++g++ s + l+ + g +W vkl +k++++ ++l kGW++F + + g +vFk++g+s f +v +f+ks EcC019162.20 85 VLGIPKSFLRRYGKD--LSGLVLLKVPGGSTWPVKL--EKSDDGkVWLWKGWQGFMEHYSIGHGHLLVFKYKGDSVF--HVIIFDKS 165 588*******977..7779***********..8887777************************9999..999985 PP
2	B3	56.8	4e-18	239	331	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffkv +++ + +++ l++p++f+ +h +k +k++ s rsW+vkl r + + l+ GW++F+++ gL gD +vF+l++r++ ++v++f EcC019162.20 239 FFKVVVQPTYVRKS-LTIPREFFIKHVQK---NKQIATLRYSDRSWQVKL--RSHEHTACLSIGWSSFARETGLLLGDCCVFELIDRDDIVFRVSIF 329 89999999999998.*********544...23577777899***..999999*************************999999999999 PP -S CS B3 98 rk 99 r+ EcC019162.20 330 RS 331 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.4E-21	26	45	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	6.1E-11	77	165	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.29E-20	84	165	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.0E-12	85	164	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.548	86	165	IPR003340	B3 DNA binding domain
CDD	cd10017	9.44E-15	86	163	No hit	No description
Gene3D	G3DSA:2.40.330.10	4.4E-21	87	165	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.8E-24	231	333	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.29E-21	233	332	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.91E-14	238	330	No hit	No description
PROSITE profile	PS50863	12.633	238	332	IPR003340	B3 DNA binding domain
SMART	SM01019	4.1E-16	239	332	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-15	239	331	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MGRRLRHRRR REGGGAEPEM DPGSPPSSPH FFKIVLSRAL ESGKLVSSSA LTVSLHTHHS 60 FSRNFRSCPP PPCASSFLNE LSLPVLGIPK SFLRRYGKDL SGLVLLKVPG GSTWPVKLEK 120 SDDGKVWLWK GWQGFMEHYS IGHGHLLVFK YKGDSVFHVI IFDKSASEID YPSSIESDMS 180 SPEEEFLSRK EEDVVEIKDS EGSMPCSRPS SYRSSREYGV PSLLAAFELA SEFKSEHPFF 240 KVVVQPTYVR KSLTIPREFF IKHVQKNKQI ATLRYSDRSW QVKLRSHEHT ACLSIGWSSF 300 ARETGLLLGD CCVFELIDRD DIVFRVSIFR SDGKNLIYVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	11	RRLRHRRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010052027.1	0.0	PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBL	A0A059CD82	0.0	A0A059CD82_EUCGR; Uncharacterized protein
STRING	XP_010052027.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	3e-20	B3 family protein