PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC019116.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 415aa MW: 45902.2 Da PI: 6.8328

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC019116.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.6	1.8e-30	46	96	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQ EcC019116.10 46 KPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQ 96 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.2E-28	44	96	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-14	45	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-20	46	97	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-8	48	96	IPR001005	SANT/Myb domain
Pfam	PF14379	2.6E-25	145	189	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MYHHNQHLGK NISPSSRMPI PSDRHMFIQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFV 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQXXXX XXXXXXXXXX XXXXXXXXXX 120 XXETNGSHVH NLNIVPQTNK NLPFGEALQM QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ 180 SVLEKAQETL GRQNVGSASL EATKLQLSEL VSKVSTQSLN SAFPDLKELQ GLCAQQIQTN 240 PPTDCSVDSC LTSCEGSHKD QEIHNNGIGL RPYSGGSVLL DPKGITDEPR TEKIEFKWGG 300 DLKEDRMFLS YGVKEMERSF PGGLGQGHLS MSIGLEGGLG CSEVKNKAKE VGGSVNFLER 360 LHSRADSVNM DSNQRSCGNQ LHYFEAKLDL NAREETDVAS SGKQFDLNGN GFGWG

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MYHHNQHLGK NISPSSRMPI PSDRHMFIQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFV  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQXXXX XXXXXXXXXX XXXXXXXXXX  120
XXETNGSHVH NLNIVPQTNK NLPFGEALQM QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ  180
SVLEKAQETL GRQNVGSASL EATKLQLSEL VSKVSTQSLN SAFPDLKELQ GLCAQQIQTN  240
PPTDCSVDSC LTSCEGSHKD QEIHNNGIGL RPYSGGSVLL DPKGITDEPR TEKIEFKWGG  300
DLKEDRMFLS YGVKEMERSF PGGLGQGHLS MSIGLEGGLG CSEVKNKAKE VGGSVNFLER  360
LHSRADSVNM DSNQRSCGNQ LHYFEAKLDL NAREETDVAS SGKQFDLNGN GFGWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-19	46	96	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	46	96	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	46	96	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	46	96	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036186.1	0.0	PREDICTED: myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-132	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A059A1W6	0.0	A0A059A1W6_EUCGR; Uncharacterized protein
STRING	XP_010036186.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-135	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]