PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC018913.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 19210.6 Da PI: 8.399 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.2 | 1.6e-11 | 73 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGV +++ +g ++ eIrd ++ng r++lg++ t+++Aa + +a kl+g EcC018913.10 73 TRYKGVMRRS-WGNYAMEIRDRKKNG--VRIWLGTYETPKDAALTYSQATFKLRG 124 68****8666.**********77787..********************9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-6 | 73 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.35E-17 | 73 | 127 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-20 | 74 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-14 | 74 | 127 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.148 | 74 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-16 | 74 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MESWNELPLK VDDSEDMMVY GALCNVLNSS IGRASNQELD FKVMIIDYNS IGLATEKKPQ 60 TVEHEVQALV ERTRYKGVMR RSWGNYAMEI RDRKKNGVRI WLGTYETPKD AALTYSQATF 120 KLRGSKAKAQ QPSPRWLSQV QAYQGQLNVW SVEPSSPSTS SGGEEEKER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-18 | 75 | 132 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-18 | 75 | 132 | 6 | 63 | ATERF1 |
3gcc_A | 2e-18 | 75 | 132 | 6 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010068076.1 | 1e-82 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A059B9S4 | 3e-55 | A0A059B9S4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010068076.1 | 6e-82 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 7e-32 | ethylene responsive element binding factor 2 |