PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC018751.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 302aa    MW: 31746.2 Da    PI: 9.7803
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC018751.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.9e-08101126227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   kt+ C+ +     Ck+G++C+FaHg+
  EcC018751.10 101 KTRMCNKYNTAEGCKFGNKCHFAHGE 126
                   89**********************96 PP
2zf-CCCH38.22.5e-12269293126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   ykt+lC++fa+ G C +G+rC+FaHg
  EcC018751.10 269 YKTKLCDNFAK-GSCTFGERCHFAHG 293
                   9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.53360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.8363361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-53459IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-63558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-1497130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-898130IPR000571Zinc finger, CCCH-type
SMARTSM003560.299126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.79399127IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.05E-15164245IPR004088K Homology domain, type 1
SMARTSM003227.2E-13174244IPR004087K Homology domain
PROSITE profilePS5008414.34175239IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.0E-16175245IPR004088K Homology domain, type 1
CDDcd001051.06E-14177239No hitNo description
PfamPF000138.7E-12177241IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.108.6E-17264299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-9267299IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-8268294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558268295IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9269293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDTRKRGRSE GGPYANGGLK KPKQELESLS GVGSKSKPCT KFFSIAGCPF GEGCHFLHYV  60
PGGYNAVAQM MNLAPAVPQA PRNMAAPPLQ NGTGASQPAV KTRMCNKYNT AEGCKFGNKC  120
HFAHGEWELG KPIAPSFDDP RSMGPITGPI TSHRMGGRME PLPPPPGPVS SFGASATAKI  180
SVDASLAGAI IGKGGVNSKQ ICRQTGAKLS IRDHESNPAL RNIEFEGTFE QIKQASTMVR  240
ELIDNISALT GHSKGHGGPG GPAPPGSNYK TKLCDNFAKG SCTFGERCHF AHGAAELRKT  300
AL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036484.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A059A2Q90.0A0A059A2Q9_EUCGR; Uncharacterized protein
STRINGXP_010036484.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-55C3H family protein