PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC018455.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Nin-like

Protein Properties

Length: 345aa MW: 37879.1 Da PI: 6.1209

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC018455.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.8e-29	16	67	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl +l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ EcC018455.10 16 AEKTVSLGVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 67 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.654	1	87	IPR003035	RWP-RK domain
Pfam	PF02042	5.3E-26	20	67	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-23	238	329	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-25	242	324	No hit	No description
PROSITE profile	PS51745	19.998	245	327	IPR000270	PB1 domain
SMART	SM00666	1.9E-20	245	327	IPR000270	PB1 domain
CDD	cd06407	1.77E-31	246	326	No hit	No description
Pfam	PF00564	3.9E-17	246	326	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
VTSLSRRQHE KKRSTAEKTV SLGVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP 60 SRKINKVNRS LKKIQTVLNS VQGVEGGLKF DPNTGGFVAA GSIQEFDAQK NFIPDKKPAV 120 QGEEASIEEE ERSIPFVCGN NSAIKLEDEY CVGGDHLGPS TSSLLDISHE EAKKSSISQI 180 EYREDSKSTA VDDGIVEHNR PASSSMTDSS DGSGSIMHGS SSSSQSFEEG KHSKERTSSH 240 DSGSKVTVKA TYKDDTIRFK FEPSDGCFQL YDEVSKRFKL QYGTFQLKYL DDEDEWVMLV 300 SDSDLQECLE IMEYVGTRTV KFLVRDVPAA MGSSGGSNCF LSGCS

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

VTSLSRRQHE KKRSTAEKTV SLGVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP  60
SRKINKVNRS LKKIQTVLNS VQGVEGGLKF DPNTGGFVAA GSIQEFDAQK NFIPDKKPAV  120
QGEEASIEEE ERSIPFVCGN NSAIKLEDEY CVGGDHLGPS TSSLLDISHE EAKKSSISQI  180
EYREDSKSTA VDDGIVEHNR PASSSMTDSS DGSGSIMHGS SSSSQSFEEG KHSKERTSSH  240
DSGSKVTVKA TYKDDTIRFK FEPSDGCFQL YDEVSKRFKL QYGTFQLKYL DDEDEWVMLV  300
SDSDLQECLE IMEYVGTRTV KFLVRDVPAA MGSSGGSNCF LSGCS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026639.1	0.0	PREDICTED: protein NLP8
Refseq	XP_010028556.1	0.0	PREDICTED: protein NLP8
Swissprot	O22864	4e-96	NLP8_ARATH; Protein NLP8
TrEMBL	A0A059DB61	0.0	A0A059DB61_EUCGR; Uncharacterized protein
STRING	XP_010026047.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	5e-88	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]