PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC018347.50

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 278aa MW: 29977.1 Da PI: 9.3191

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC018347.50	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	21	81	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+s+ntkfCyynnysl+qPryfCk+CrryWt GG+lrnvPvGgg+rknkk+s EcC018347.50 21 PQEQLNCPRCNSNNTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNVPVGGGSRKNKKVS 81 6899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	16	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-33	23	79	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	25	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0015743	Biological Process	malate transport
GO:0015979	Biological Process	photosynthesis
GO:0046274	Biological Process	lignin catabolic process
GO:0055114	Biological Process	oxidation-reduction process
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0009522	Cellular Component	photosystem I
GO:0016021	Cellular Component	integral component of membrane
GO:0048046	Cellular Component	apoplast
GO:0003677	Molecular Function	DNA binding
GO:0005507	Molecular Function	copper ion binding
GO:0005515	Molecular Function	protein binding
GO:0052716	Molecular Function	hydroquinone:oxygen oxidoreductase activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEETSPNACN NRAMLEKRAR PQEQLNCPRC NSNNTKFCYY NNYSLTQPRY FCKTCRRYWT 60 DGGSLRNVPV GGGSRKNKKV STSSTSSSPS ASSRLPDLNP SSVISHFSAQ NPKAGLLYEG 120 QDLNLGFPGT QEYRATIAQY VQVPKVDPET SSRGPDNNSS APSSALELLR NSSSGMGSRG 180 LSLPFLPANI QADSNALYSS AGFNLQELKP SLGFSVDSRY ASAHGVVHQE NGGKLLFPFG 240 GMMKQLSSTS GSDQVDHNGK GQSSSNAYWN GMLGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010054991.1	0.0	PREDICTED: dof zinc finger protein DOF2.5 isoform X2
Swissprot	Q9ZPY0	6e-58	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A059BZU7	0.0	A0A059BZU7_EUCGR; Uncharacterized protein
STRING	XP_010054989.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	3e-56	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]