PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC018017.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27592.9 Da PI: 6.5155 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.5e-08 | 129 | 169 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L EcC018017.10 129 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 169 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.939 | 120 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-14 | 125 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-12 | 126 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.01E-11 | 126 | 174 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-12 | 127 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-6 | 130 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDFNQSKFSN NFWDLGLGME DQTLHTNDQH HHQPPFTSLW PSIHLPSMHQ TTPTTSQIPS 60 SHFVNDISIG VVANQIEDKD EEPEEELGAM KEMMYKIAAM QPVDVDPTTI RKPKRRNVRI 120 SDDPQSVAAR LRRERISEKI RILQRLVPGG TKMDTASMLD EAIRYVKFLK RQIRLLQQPN 180 NQNPTPDPGA VTGSLVGGDW QGVIAPSKPP STTSSSSFEA QVGSRFGFWS NGGGGGNSCF 240 NGHEVISE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 134 | RLRRER |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027364.1 | 0.0 | PREDICTED: transcription factor HEC3 | ||||
TrEMBL | A0A059B9E7 | 1e-170 | A0A059B9E7_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010027364.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4449 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 3e-46 | bHLH family protein |