PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC016697.90
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 266aa    MW: 28707 Da    PI: 6.254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC016697.90genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.6e-12152199455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++YI+sLq
  EcC016697.90 152 SHSLAERARREKISERMKTLQDLVPGC----NKIIGKALVLDEIINYIQSLQ 199
                   8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.66E-11146203No hitNo description
SuperFamilySSF474593.53E-18146218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-19148218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.075148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0006606Biological Processprotein import into nucleus
GO:0007017Biological Processmicrotubule-based process
GO:0043484Biological Processregulation of RNA splicing
GO:0005634Cellular Componentnucleus
GO:0030286Cellular Componentdynein complex
GO:0003677Molecular FunctionDNA binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008536Molecular FunctionRan GTPase binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDAPLVNASS FSAANPSAYS LAEIWPLGGD TGIVGPGLRA GNLDGSVEES TVTEQSGSGR  60
RRRRMKDASS EDESSKMVSS SCVVGSDLNN SNGAKRAKIA GSRDENGSSK AEVEANSVAC  120
NKSSAEQSAK PSEPPKQDYI HVRARRGQAT DSHSLAERAR REKISERMKT LQDLVPGCNK  180
IIGKALVLDE IINYIQSLQH QVEFLSMKLE AVNSRMDMSP AVEGFVPKDV STHALWTEDS  240
CVNLVHDLNG YAAWHQAQLG LPFPFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028510.11e-166PREDICTED: transcription factor bHLH79 isoform X1
RefseqXP_010028517.11e-166PREDICTED: transcription factor bHLH79 isoform X2
SwissprotQ9LV174e-69BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A059CZ481e-164A0A059CZ48_EUCGR; Uncharacterized protein
TrEMBLA0A059CZA21e-164A0A059CZA2_EUCGR; Uncharacterized protein
STRINGXP_010028510.11e-165(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.12e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]