PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC016592.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 492aa    MW: 53757.7 Da    PI: 7.0166
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC016592.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like53.26.6e-17202259154
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkv.....kgLtlehvkSHLQkYR 54 
                   kprl+WtpeL + F+ av++L G++ A P +il+++       + Lt+++v SHLQkY 
  EcC016592.30 202 KPRLVWTPELNQMFITAVNSL-GKDDAKPNKILQILRKmtgvpPHLTRQNVSSHLQKYC 259
                   79*******************.9*********9998642222346*************5 PP
2Response_reg88.71.5e-29261331107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + + +l+++l++  y +v+ ++ geeal +++e++  +D++l+D+ mpgmdGl+ll ei++ + +lp++++++ +e++++l+ ++ Ga 
  EcC016592.30  26 VLVVDDDVTCLLILEKMLQDCSY-QVTKCQRGEEALSMIRENKggFDIVLTDVHMPGMDGLQLLAEIANIGVTLPVVMFSSDSEKDTVLKGVNSGAC 121
                   89*********************.***************99999***************************************************** PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                   dfl+Kp++++ l
  EcC016592.30 122 DFLVKPIQINTL 133
                   *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.9E-4122167No hitNo description
SuperFamilySSF521723.56E-3722153IPR011006CheY-like superfamily
SMARTSM004483.3E-3024137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.69325141IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-2626134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.94E-2538141No hitNo description
Gene3DG3DSA:1.10.10.605.6E-19199264IPR009057Homeodomain-like
SuperFamilySSF466898.06E-13200264IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-14202259IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MERVTHNEKS NVLSEYGDQF PKGVRVLVVD DDVTCLLILE KMLQDCSYQV TKCQRGEEAL  60
SMIRENKGGF DIVLTDVHMP GMDGLQLLAE IANIGVTLPV VMFSSDSEKD TVLKGVNSGA  120
CDFLVKPIQI NTLKILWRHM LRSNRSPSKN STKELETLHN PTTSSSNNTH TRAENEEENS  180
KSSKRSSEEE ADHGQSKSRA KKPRLVWTPE LNQMFITAVN SLGKDDAKPN KILQILRKMT  240
GVPPHLTRQN VSSHLQKYCM NSKKTGEASK HQSTHSSLIN SPGFANLTHS TPPSLSLIGS  300
GGIQNCTTSA QYPSRAMAIA PGRQCTCCSM RMPKLVEFPD HNASPMYQTG LQSQPLVPLQ  360
QPNPLLQNHS CQQQANESAQ CPSYAPTPSV GFTSPMNAAA GHYLSATTNP HPLHSQIPTH  420
DIQSLNSSAP HLASERGLPV ALSTIGAKAN KSCGTNILAA EGEFYCGNDH NQVAEDCQVY  480
TEEAMFADIL DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1dc7_A4e-14261316109NITROGEN REGULATION PROTEIN
1dc8_A4e-14261316109NITROGEN REGULATION PROTEIN
1j56_A4e-14261316109NITROGEN REGULATION PROTEIN NR(I)
1krw_A4e-14261316109NITROGEN REGULATION PROTEIN NR(I)
1krx_A4e-14261316109NITROGEN REGULATION PROTEIN NR(I)
1ntr_A4e-14261316109NTRC RECEIVER DOMAIN
2msk_A4e-14261316109Nitrogen regulation protein NR(I)
2msl_A4e-14261316109Nitrogen regulation protein NR(I)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715510.10.0PREDICTED: two-component response regulator ORR21-like
STRINGXP_010026242.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-60response regulator 2