PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC016293.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 716aa    MW: 80857.8 Da    PI: 5.8315
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC016293.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.71.4e-1083397131373
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL+ cA+a+s++d++ a++lL++++e +sp gd  qRla+yf ++L+arl++++ ++ + +++  +++ + +  l++++l   ++P+++fs + 
  EcC016293.20 339 LRTLLILCAQAISTSDFRSANELLKQIREDSSPFGDGSQRLAHYFGNGLEARLVGNSIRTNDFFSTILARKISAAAFLKYYHLNISTCPFVQFSTFF 435
                   5789***************************************************99999999*999999999************************ PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   aN +Il+ +e+++++HiiDf+i  G+QWp+L+q+L+sRpegp +lRiTg++ p++g   +e++eetg rL+k++e+++v fefn+++++++e +++ 
  EcC016293.20 436 ANYMILKFAEKATTLHIIDFGIAFGFQWPNLIQKLSSRPEGPCKLRITGIELPQAGfrPAERVEETGCRLKKYCERFDVAFEFNFIASRNWELIKVA 532
                   *******************************************************9*****************************9999******** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L+++++E++aVn+ ++ ++llde+v+ +++rd+vL+l+++++P+++v++ + ++++++ F++rf eal + s ++d l+a++  ++ +r ++Ere+
  EcC016293.20 533 DLKIQSNETVAVNCLFRFKNLLDETVEDNNPRDAVLNLIRQIKPDIFVHAVRSVSYTAAFFVTRFREALFHLSDVYDLLDATVDCDDTKRLVIEREF 629
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    grei+nv+aceg+ r er et+++W+ r  +aGFk++pl+++ +k  +  ++  + + + ++e+ +++++gW++r  +  S+W
  EcC016293.20 630 HGREIMNVIACEGSGRMERPETYKQWQVRHLRAGFKALPLDQDLMKLFRGKMKAWYHKDFVLDEDGNWMLQGWRGRIFYGSSCW 713
                   ********************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.419313694IPR005202Transcription factor GRAS
PfamPF035144.9E-106339713IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
TSMSLDGGSF GPSRSLSKGQ SPERDSLSPS GDSDSLDPVL KYINQMLMEE NMEEQPWVFA  60
DQVALQNTEK SLYDALGQQN LEQSDKSPSQ VELSQYIESP ASNLSGSSSA HRSHDATNVT  120
LSSSDLADAD ILYTIGEHSH AMLKNPDQNF LWNVDSNLQF LANSSSSITN YDDGSEESLH  180
GLLLKSILST GEPTIQFKNG LEEASKFLLT NNQLAINPED SKPSSETKKG TPRTPIEEEI  240
DMKSSSNGFK GLKNHEREED DFQEGRANKQ TALYTEESEL SDLFDKVLLS TENGPSMCSG  300
DKSVETRVTK DIRPPRNKRG SNRGRGRGKK QKSKNTVDLR TLLILCAQAI STSDFRSANE  360
LLKQIREDSS PFGDGSQRLA HYFGNGLEAR LVGNSIRTND FFSTILARKI SAAAFLKYYH  420
LNISTCPFVQ FSTFFANYMI LKFAEKATTL HIIDFGIAFG FQWPNLIQKL SSRPEGPCKL  480
RITGIELPQA GFRPAERVEE TGCRLKKYCE RFDVAFEFNF IASRNWELIK VADLKIQSNE  540
TVAVNCLFRF KNLLDETVED NNPRDAVLNL IRQIKPDIFV HAVRSVSYTA AFFVTRFREA  600
LFHLSDVYDL LDATVDCDDT KRLVIEREFH GREIMNVIAC EGSGRMERPE TYKQWQVRHL  660
RAGFKALPLD QDLMKLFRGK MKAWYHKDFV LDEDGNWMLQ GWRGRIFYGS SCWVPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-423436698328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043533.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724298.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D4800.0A0A059D480_EUCGR; Uncharacterized protein
STRINGXP_010043533.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]