PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC016293.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 475aa MW: 54560 Da PI: 7.7195

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC016293.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	359.3	5.8e-110	97	472	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshl 96 l++lL+ cA+a+s++d++ a++lL++++e +sp gd+ qRla+yf ++L+arl+++ ++ + ++s ++++ ++ l++++l ++P+ +fs + EcC016293.10 97 LRTLLILCAQALSASDFRSANELLKQIREDSSPFGDASQRLAHYFGNGLEARLVGNNIRMKDFYSTSILARTTsAADFLKYHHLNISTCPFAQFSAF 193 5789*************************************************8888888887666655553888899999999******* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 aN +Il+ +e+++++HiiDf+i G+QWp+L+q+L+sRpegp +l iTg++ p++g +e++eetg rL+k++e+++v fefn+++++++e +++ EcC016293.10 194 FANYMILKFAEKDTTLHIIDFGIAFGFQWPNLIQKLSSRPEGPCKLHITGIELPQAGfhPAERIEETGCRLKKYCERFDVAFEFNFIASRDWELIKV 290 ***************************************************9999***********************9999*** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +L+++++E++aVn+ ++ ++llde+v+ +++rd+vL+l+++++P+++v++ + +++n++ F++rf eal + s ++d l+a++ +++er ++Ere EcC016293.10 291 ADLKIQSNETVAVNCLVRFKHLLDETVEDNNPRDAVLNLIRQIKPDIFVHAVRSVSYNAAFFVTRFREALFHLSDVYDLLDATIDCDNKERLVIERE 387 ********************************************************************************************* PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + grei+nv+aceg+er+er et+++W+ r ++aGFk+++l+++ +k ++ ++ + + + ++e+ +++++gW++r + S+W EcC016293.10 388 FHGREIMNVIACEGSERIERPETYKQWQVRHMRAGFKALSLDQDFMKLFRAKMKAWYHKDFVLDEDGNWMLQGWRGRIFYGSSCW 472 *****************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.097	71	453	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-107	97	472	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
KSSSNGFKGL QNHERDEDAF EEGRANKQTA LYTEESELSD LFDKVLLSTE NGPSMCFGDK 60 SVETGVTKDI RPPRNKCGSN RGRGRGKKQK SKNTVDLRTL LILCAQALSA SDFRSANELL 120 KQIREDSSPF GDASQRLAHY FGNGLEARLV GNNIRMKDFY STSILARTTS AADFLKYHHL 180 NISTCPFAQF SAFFANYMIL KFAEKDTTLH IIDFGIAFGF QWPNLIQKLS SRPEGPCKLH 240 ITGIELPQAG FHPAERIEET GCRLKKYCER FDVAFEFNFI ASRDWELIKV ADLKIQSNET 300 VAVNCLVRFK HLLDETVEDN NPRDAVLNLI RQIKPDIFVH AVRSVSYNAA FFVTRFREAL 360 FHLSDVYDLL DATIDCDNKE RLVIEREFHG REIMNVIACE GSERIERPET YKQWQVRHMR 420 AGFKALSLDQ DFMKLFRAKM KAWYHKDFVL DEDGNWMLQG WRGRIFYGSS CWVPT

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

KSSSNGFKGL QNHERDEDAF EEGRANKQTA LYTEESELSD LFDKVLLSTE NGPSMCFGDK  60
SVETGVTKDI RPPRNKCGSN RGRGRGKKQK SKNTVDLRTL LILCAQALSA SDFRSANELL  120
KQIREDSSPF GDASQRLAHY FGNGLEARLV GNNIRMKDFY STSILARTTS AADFLKYHHL  180
NISTCPFAQF SAFFANYMIL KFAEKDTTLH IIDFGIAFGF QWPNLIQKLS SRPEGPCKLH  240
ITGIELPQAG FHPAERIEET GCRLKKYCER FDVAFEFNFI ASRDWELIKV ADLKIQSNET  300
VAVNCLVRFK HLLDETVEDN NPRDAVLNLI RQIKPDIFVH AVRSVSYNAA FFVTRFREAL  360
FHLSDVYDLL DATIDCDNKE RLVIEREFHG REIMNVIACE GSERIERPET YKQWQVRHMR  420
AGFKALSLDQ DFMKLFRAKM KAWYHKDFVL DEDGNWMLQG WRGRIFYGSS CWVPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-46	104	474	26	380	Protein SCARECROW
5b3h_A	2e-46	104	474	25	379	Protein SCARECROW
5b3h_D	2e-46	104	474	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043534.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_010043535.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_010043536.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_018724296.1	0.0	PREDICTED: scarecrow-like protein 34
Refseq	XP_018724297.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	Q9XE58	1e-175	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A059D4Y9	0.0	A0A059D4Y9_EUCGR; Uncharacterized protein
STRING	XP_010043534.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-173	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]