PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC016234.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 489aa    MW: 53591.9 Da    PI: 6.6881
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC016234.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS335.69.2e-1031214892374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   +e+L+e+A+a+ +g    a+++L rls   +p  ++ q+l  y++ AL++r++      ++     +  e  +++++++++ ++++sP++k+++++a
  EcC016234.30 121 EETLVEAATAIYEGRVDGASEILRRLSAVPNPMSNSKQKLLGYMLSALKSRVSP-----ADNP--PPVLELFTKDHVSSTQSLYDLSPCFKLGFMAA 210
                   689**************************************************9.....3322..222223489999******************** PP

          GRAS  99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   N aIlea++++   +++H+iDfd++q +Q+++Ll+aL++R+ + + +l+iT++++   + +e+l+ + +rL+++A+++gv++ fn+ v++++++l+ 
  EcC016234.30 211 NLAILEAASEQpstNKLHVIDFDVGQEGQYINLLHALSTRQpGIQSTLKITTLAD-GFNGEERLRMVMDRLSELAAQMGVRLVFNI-VSQKVSELSR 305
                   *********9999999************************956677*********.44499************************9.8********* PP

          GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   ++L ++p+E+laVnl+++l+r++desvs+e++rde+L+ vk+l P+vv++veqe++ n+++F++r  eal yy al++sle+++pr+s er+  E+ 
  EcC016234.30 306 DSLGCEPDEVLAVNLAFKLYRMPDESVSVENPRDELLRRVKGLAPRVVTLVEQEMNGNTAPFATRAGEALGYYGALLESLESTVPRDSPERARAEEG 402
                   ************************************************************************************************* PP

          GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  pl++++a++ k+ l+  +  + g++v+ee+g +++gW +r+L+++SaWr
  EcC016234.30 403 -LSRKLGNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLGQHVAESLKARLESGNrvNPGFTVKEENGGVCFGWLGRTLTVASAWR 489
                   .****************************************************98877789**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.21494467IPR005202Transcription factor GRAS
PfamPF035143.2E-100121489IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MERSELCGQN PKKLRDASDA HSQTGDNPRQ PLFAENPIVS VLGSFGNTQS LSSGAESDEV  60
LQVPSNAFVS SEVSEGSESI RSPVQRPPVK SAKTRVRRLQ RSPVEIVKTP LQRPPLFILM  120
EETLVEAATA IYEGRVDGAS EILRRLSAVP NPMSNSKQKL LGYMLSALKS RVSPADNPPP  180
VLELFTKDHV SSTQSLYDLS PCFKLGFMAA NLAILEAASE QPSTNKLHVI DFDVGQEGQY  240
INLLHALSTR QPGIQSTLKI TTLADGFNGE ERLRMVMDRL SELAAQMGVR LVFNIVSQKV  300
SELSRDSLGC EPDEVLAVNL AFKLYRMPDE SVSVENPRDE LLRRVKGLAP RVVTLVEQEM  360
NGNTAPFATR AGEALGYYGA LLESLESTVP RDSPERARAE EGLSRKLGNS VACEGRDRVE  420
RCEVFGKWRA RMGMAGFELK PLGQHVAESL KARLESGNRV NPGFTVKEEN GGVCFGWLGR  480
TLTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4115548938375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060571.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-154SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DIP40.0A0A059DIP4_EUCGR; Uncharacterized protein
STRINGXP_010043392.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-156SCARECROW-like 8