PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC015983.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 112aa MW: 12530.8 Da PI: 4.5952 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 62.5 | 1.1e-19 | 6 | 62 | 44 | 100 |
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++ ++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e EcC015983.40 6 SIRQELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQVDVLQNQLALAQAE 62 567899**********************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.421 | 1 | 63 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-17 | 8 | 60 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MEERFSIRQE LPEHQRSDAV SSMVYEANAR MRDPVYGCVG AISSLQQQVD VLQNQLALAQ 60 AEVVHMRLQT PQFPSTSSSA IAATNNDCSH SRRSYYPLNG VEQADVEDSL WS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-18 | 6 | 64 | 54 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-18 | 6 | 64 | 54 | 112 | LOB family transfactor Ramosa2.1 |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin. {ECO:0000269|PubMed:17485849}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018730826.1 | 7e-76 | PREDICTED: LOB domain-containing protein 4 isoform X3 | ||||
Swissprot | Q9SA51 | 7e-26 | LBD3_ARATH; LOB domain-containing protein 3 | ||||
TrEMBL | A0A059C0A2 | 1e-66 | A0A059C0A2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010064042.1 | 2e-67 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-18 | LOB domain-containing protein 4 |
Publications ? help Back to Top | |||
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