PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC015947.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 92aa MW: 10617.2 Da PI: 10.3562 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 48.3 | 2.7e-15 | 20 | 48 | 49 | 77 |
EEETTT--SS--S-STTTT-------S-- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkq 77 fhel efDe+krsCrrrLa+hnerrrk+ EcC015947.20 20 FHELLEFDENKRSCRRRLAGHNERRRKNP 48 ***************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.528 | 1 | 47 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.3E-12 | 19 | 51 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.9E-9 | 20 | 46 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001709 | Biological Process | cell fate determination | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0045814 | Biological Process | negative regulation of gene expression, epigenetic | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0035102 | Cellular Component | PRC1 complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 92 aa Download sequence Send to blast |
MILVPIDVRV FIVFILGTLF HELLEFDENK RSCRRRLAGH NERRRKNPAE PHIEGSSGKA 60 GGSTQMKELV CGQVDNRGRI QENATYKHFQ IR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035775.1 | 2e-47 | PREDICTED: squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A058ZZC2 | 2e-45 | A0A058ZZC2_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059A0B6 | 6e-46 | A0A059A0B6_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059A0I2 | 4e-46 | A0A059A0I2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035775.1 | 7e-47 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-14 | squamosa promoter binding protein-like 4 |