PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC015530.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 579aa    MW: 65003.8 Da    PI: 7.3981
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC015530.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.61.8e-1192105782373
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++lL+ecA+a+s++d+e+ ++l+++  + as +g  +  l +y++e+L ar  + ++++++  +++e +   s++ l+++++++e++P+lkf++++a
  EcC015530.20 210 RHLLIECAKALSENDTEKFEKLIKKAWNAASIHGGQVWHLGSYMVEGLMARRKSLGTTVFHVPKCEEPQ---SKDWLTYMHVLYEICPYLKFGYMAA 303
                   79****************************************************99****999999998...999********************** PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   N aI +a   ++r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s   ++   ee+g+ La++ e++++++ef+ l +   +d++ ++
  EcC015530.20 304 NGAIADACRDADRIHIIDFQIAQGTQWVTLLQALAARPGGAPHVRITGIDDPVSRytRRVGSEEIGRMLAEVSEQFKIHVEFRGL-SVFSSDVTRDM 399
                   ****************************************************9998899999**********************5.778999***** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   L+++pgEalaVn+ lqlhr++desv+++++rd +L++vkslsPkv++++eqe+++n+++Fl rf+e+l+yysa+f+s+++ lpr+ ++ri   r++l
  EcC015530.20 400 LDIRPGEALAVNFPLQLHRTPDESVDTNNPRDGLLRMVKSLSPKVITLIEQESNTNTSPFLSRFVETLDYYSAMFESIDMALPRDGNDRIDPVRHCL 496
                   ************************************************************************************************* PP

          GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   +r+i n++aceg+er+ rhe ++kWr+rl++aGF+++pl+ ++++ + +llr+++++ ++ ee++g+++lgWk+r+L+svSaW
  EcC015530.20 497 KRDIINIIACEGKERVGRHELFGKWRSRLQMAGFSQYPLNAHVNSVIGTLLRRYSEN-FTAEEKEGAMLLGWKQRSLISVSAW 578
                   *******************************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.661183560IPR005202Transcription factor GRAS
PfamPF035146.1E-117210578IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0045010Biological Processactin nucleation
GO:0048317Biological Processseed morphogenesis
GO:0055085Biological Processtransmembrane transport
GO:0005618Cellular Componentcell wall
GO:0009524Cellular Componentphragmoplast
GO:0016021Cellular Componentintegral component of membrane
GO:0005199Molecular Functionstructural constituent of cell wall
GO:0022857Molecular Functiontransmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MELHQLFGCG LTDAGLWCSS SHPAVTSISN RSLKSLKFDI GSSPCLPFPS QVESEALPPP  60
RDNREQQSSA ENLSISGASR NHTIETNSNL VCSKSDFCVD PLSDRLTSCS DLTSLSGSLN  120
SSPRMKFAAK ELKATFDDVV TSPYVSYWKG SIPLVQGQKP NRQSQECYRL RSIQPQASVA  180
SRHSQFNELE KWHKAIDESL VRSPPEDKTR HLLIECAKAL SENDTEKFEK LIKKAWNAAS  240
IHGGQVWHLG SYMVEGLMAR RKSLGTTVFH VPKCEEPQSK DWLTYMHVLY EICPYLKFGY  300
MAANGAIADA CRDADRIHII DFQIAQGTQW VTLLQALAAR PGGAPHVRIT GIDDPVSRYT  360
RRVGSEEIGR MLAEVSEQFK IHVEFRGLSV FSSDVTRDML DIRPGEALAV NFPLQLHRTP  420
DESVDTNNPR DGLLRMVKSL SPKVITLIEQ ESNTNTSPFL SRFVETLDYY SAMFESIDMA  480
LPRDGNDRID PVRHCLKRDI INIIACEGKE RVGRHELFGK WRSRLQMAGF SQYPLNAHVN  540
SVIGTLLRRY SENFTAEEKE GAMLLGWKQR SLISVSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-492135798375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060450.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018732215.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A059BLW70.0A0A059BLW7_EUCGR; Uncharacterized protein
STRINGXP_010060450.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-140GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]