PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC015434.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 101aa MW: 11389.7 Da PI: 6.3829 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 50.6 | 5.5e-16 | 3 | 55 | 47 | 99 |
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +++p + r +a++++ yeA ar++dPvyG+vg+i++lqqq+ q ++e+ ++k EcC015434.30 3 QQVPGHLRAEAAECISYEATARVQDPVYGCVGIITQLQQQITQIHSEIMKIKG 55 6789999****************************************988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.401 | 1 | 57 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-13 | 3 | 53 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005768 | Cellular Component | endosome | ||||
GO:0005802 | Cellular Component | trans-Golgi network |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MEQQVPGHLR AEAAECISYE ATARVQDPVY GCVGIITQLQ QQITQIHSEI MKIKGEMVAH 60 RSAHPQHLPS PQPQGEPSWF SSTHRQEQDN FQSDKHLSGN F |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018719836.1 | 4e-69 | PREDICTED: LOB domain-containing protein 23-like | ||||
TrEMBL | A0A059AKP7 | 1e-67 | A0A059AKP7_EUCGR; Uncharacterized protein | ||||
STRING | Aquca_018_00023.1 | 1e-18 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-11 | LOB domain-containing protein 24 |