PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC014566.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 209aa    MW: 23985.5 Da    PI: 9.2563
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC014566.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.45.1e-272911499
                  T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 14 grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +rlv+pk++ae++    g +  ++  l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ ++++ +++++r+
  EcC014566.40  2 NRLVIPKQHAEKYfplgGDSVDKGLLLSFEDESGKFWRFRYSYWSSSQSYVLTKGWSRYVKEKRLDAGDVVFFERHRANGERIFIGWRRR 91
                  79**************955556889*************************************************88879999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.015191IPR003340B3 DNA binding domain
SMARTSM010191.0E-12192IPR003340B3 DNA binding domain
CDDcd100173.15E-16185No hitNo description
PfamPF023627.9E-24291IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-24290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-32296IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
LNRLVIPKQH AEKYFPLGGD SVDKGLLLSF EDESGKFWRF RYSYWSSSQS YVLTKGWSRY  60
VKEKRLDAGD VVFFERHRAN GERIFIGWRR RGAAAAAQEG GRGGDGWGRR RALYSDSEHH  120
HHHHPQQPHH HPNFAYPTHQ GDDGPPMPYR PDCPHAGSDG RRPGNSKGLL RLFGVNMEYQ  180
VEEPEISTSE GSTLSPTHHH PSQHHQFLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-4019120113B3 domain-containing transcription factor NGA1
5os9_B6e-4019120113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720182.11e-152PREDICTED: B3 domain-containing protein At2g36080-like
RefseqXP_018720183.11e-152PREDICTED: B3 domain-containing protein At2g36080-like
RefseqXP_018720184.11e-152PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI34e-50Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A438EK283e-67A0A438EK28_VITVI; B3 domain-containing protein
TrEMBLB9SX035e-67B9SX03_RICCO; Transcription factor, putative
TrEMBLF6HKN65e-68F6HKN6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g02810.t019e-69(Vitis vinifera)
STRINGXP_002530522.18e-68(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.24e-43B3 family protein