PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC014478.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 376aa    MW: 42748.1 Da    PI: 5.018
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC014478.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35451372103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+yei++d+++++++sws+ +nsfvv+d + fa ++Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F +g+k ll++i+
  EcC014478.20  45 FLTKTYEIVDDPATNHIVSWSKGNNSFVVWDAQAFAMSLLPRYFKHNNFSSFIRQLNTYGFRKVDPDK---------WEFANEGFLRGQKYLLKNIR 132
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++++
  EcC014478.20 133 RRRTT 137
                   *9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.4E-6041134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-3841134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3541134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.5E-3145134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MNNPPVQAKK EHLGGSVFSS SSSPVTVNAI PQPIEGLHDL GPPPFLTKTY EIVDDPATNH  60
IVSWSKGNNS FVVWDAQAFA MSLLPRYFKH NNFSSFIRQL NTYGFRKVDP DKWEFANEGF  120
LRGQKYLLKN IRRRRTTHLA PHNSQQVLDP CVEVGRFGLD GEIDRLKRDK QVLMMELIKL  180
RQQQQTSKSC LQVMEQRLKK TEMKQHQMMN FLARAMKNPD FLQQLVQQKD SRKELEEVLG  240
KNKRRCSIDQ GPSNVSLCDD DDQPVHDNEP SIGTFAKVEP QNYGDIGEFE RFELEKIVVD  300
MDGGVGASRC NNIEEDQIGL VEENENRGNK ALDEVFWEDL FHEGIEQTGL LGVGDEEDGE  360
DINILAGQLG YLSSIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-264313718123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024221.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-126HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A059B4430.0A0A059B443_EUCGR; Uncharacterized protein
STRINGXP_010024221.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-126heat shock transcription factor A6B