PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC013824.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bZIP
Protein Properties Length: 356aa    MW: 39180.6 Da    PI: 6.4551
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC013824.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83.2e-10157214562
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                   kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l   +   + l++e
  EcC013824.40 157 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTSGLTAE 214
                   9*****************************************9998877776666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.6E-17153217IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.749155218IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.2E-10157208No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-10157211No hitNo description
PfamPF001707.2E-9157208IPR004827Basic-leucine zipper domain
CDDcd147035.68E-24158207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006801Biological Processsuperoxide metabolic process
GO:0009813Biological Processflavonoid biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004784Molecular Functionsuperoxide dismutase activity
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0045430Molecular Functionchalcone isomerase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEMRDPPPNP SHSPHIPSPQ NPRAAPAIAP PLAAPRGGHH RRAHSEVNFR IPEDLDLGPD  60
PFENGPSGSF EDFGSEDDLL STYMDIEKFG SKLDDGQGPS DPKPENAGGG GDVGEKSARP  120
RHRYSNSVDS SSILESIEAK KAMAPDKLAE LWTVDPKRAK RILANRQSAA RSKERKARYI  180
SELERKVQTL QTEATTLSAQ LTLFQRDTSG LTAENTELKL RLQAMEQQAQ LRDALNEALK  240
KEVERLKVAT GEAMTPSDTY NLGLHHFPYA KPSYFPHQPQ SGHVDPQNLQ MTQFHMFQPN  300
MAHQPLVAAA HSNAFSDMMQ QESLGRFQGL DISNKGSQIV KSEAPSISAS ESSSTF
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067612.10.0PREDICTED: transcription factor RF2b isoform X1
SwissprotO228731e-121BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A059BJA80.0A0A059BJA8_EUCGR; Uncharacterized protein
STRINGXP_010067612.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-120bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]