PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC013753.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 275aa MW: 30159.7 Da PI: 8.7838 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 1e-11 | 16 | 40 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+ff++t tCk+G rCkF+H++ EcC013753.10 16 EPDCPFFLKTQTCKFGLRCKFNHPR 40 789********************96 PP | |||||||
2 | zf-CCCH | 38 | 2.8e-12 | 61 | 85 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G++CkF+H++ EcC013753.10 61 EPPCAFYLKTGNCKFGATCKFHHPK 85 79*********************96 PP | |||||||
3 | zf-CCCH | 39.8 | 7.6e-13 | 139 | 165 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ EcC013753.10 139 PGEVDCPFYLKTGSCKYGATCRYNHPE 165 57899********************96 PP | |||||||
4 | zf-CCCH | 41.9 | 1.7e-13 | 223 | 246 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG Ck+G+rCkF+H+ EcC013753.10 223 QIECDYYMKTGVCKFGERCKFHHP 246 568********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.6E-4 | 13 | 40 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.854 | 13 | 41 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 16 | 40 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.26E-5 | 18 | 42 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 19 | 40 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.976 | 58 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 58 | 85 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-10 | 61 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 61 | 85 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-6 | 63 | 84 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-7 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.554 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-10 | 140 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 142 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-5 | 144 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 220 | 247 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.028 | 220 | 248 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-7 | 222 | 249 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-11 | 224 | 246 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-6 | 226 | 246 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
APLVTTVESL PQRAGEPDCP FFLKTQTCKF GLRCKFNHPR DKIIPSGTLD DTLNLPERPT 60 EPPCAFYLKT GNCKFGATCK FHHPKDIKVA QVLQDTGAGE LRDSLAENDR MVREVKLVKP 120 LISLSPASSH NTKGLPIRPG EVDCPFYLKT GSCKYGATCR YNHPERNAID LHVGIVPIVG 180 ASPARNPNFA AGSAASIYQA VDPILSQLML GAGPTIYPQR PGQIECDYYM KTGVCKFGER 240 CKFHHPIDRS APTQAMANQS QQTVELTLAG LPRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010064113.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X3 | ||||
Refseq | XP_010064114.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X4 | ||||
Swissprot | Q941Q3 | 3e-91 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A059BZQ6 | 0.0 | A0A059BZQ6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010064111.1 | 1e-166 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9761 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-93 | floral homeotic protein (HUA1) |