PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC013666.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 242aa MW: 26764.6 Da PI: 4.8821 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 173.3 | 2.6e-54 | 22 | 123 | 4 | 102 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 +fw+ q ie+a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivp EcC013666.20 22 MFWSIQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 118 7999877789*************************************************************************************** PP NF-YC 98 rdelk 102 rdelk EcC013666.20 119 RDELK 123 **975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.05E-33 | 26 | 113 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.9E-37 | 33 | 105 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.7E-21 | 41 | 104 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010411 | Biological Process | xyloglucan metabolic process | ||||
GO:0042546 | Biological Process | cell wall biogenesis | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0048046 | Cellular Component | apoplast | ||||
GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | ||||
GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity | ||||
GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MDNAQQQPQP NSYPPPPPPQ AMFWSIQRQE IEQANDFKNH QLPLARIKKI MKADEDVRMI 60 SAEAPVLFAK ACELFILELT IRSWLHAEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRD 120 ELKDEAAGLG AAAAMVGPPA SGVPYYYPPM GQPAAPGMMI GRPALDPAGG VYVQQPPPPS 180 QAWQSVWQTA APDDGAYGKP GDLDGPGYVS NDRYLVASIV FLHDFSRFLF RLVQFSSAGW 240 MV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-54 | 27 | 119 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 91 | 97 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037409.1 | 1e-126 | PREDICTED: nuclear transcription factor Y subunit C-1 isoform X2 | ||||
Swissprot | Q9SMP0 | 4e-99 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A059A6X6 | 1e-125 | A0A059A6X6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037408.1 | 1e-125 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48590.1 | 5e-70 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
---|---|---|---|
|