PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC013133.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 122aa    MW: 13958.1 Da    PI: 8.4687
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC013133.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.86e-1111100278
                   EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegD 78 
                   +k+l++sd ++++rl +p+  ++++             k+ e+ ++++ de+   + ++ + y+ +sg+yvl+++W keFv+  gL egD
  EcC013133.10  11 KKTLKKSDLGQLSRLLIPRAAVATYvlpcmdeerarRVKSSEGAEVVVWDEDThSEHRLVFAYWASSGSYVLKGCWmKEFVQRRGLAEGD 100
                   699*************************99888877444457889999998776667777777*************668**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.61E-138109IPR015300DNA-binding pseudobarrel domain
CDDcd100177.76E-1510118No hitNo description
Gene3DG3DSA:2.40.330.102.4E-1411107IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-812100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
LVLRYDPYKI KKTLKKSDLG QLSRLLIPRA AVATYVLPCM DEERARRVKS SEGAEVVVWD  60
EDTHSEHRLV FAYWASSGSY VLKGCWMKEF VQRRGLAEGD EIGICWDPIA SKLDFSLLHK  120
AN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041685.13e-80PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059C5C55e-79A0A059C5C5_EUCGR; Uncharacterized protein
STRINGXP_010058653.12e-80(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.13e-22B3 family protein