PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC013046.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 214aa MW: 24533.7 Da PI: 9.1376 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEd +l+++++ G ++W +Ia++ g++R++k+c++rw +yl EcC013046.50 21 KEAWTAEEDRKLAEVIAVSGARRWQAIAAKAGLNRSGKSCRLRWMNYL 68 579*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.4e-16 | 74 | 119 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l EcC013046.50 74 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 119 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.994 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-28 | 19 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-16 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 23 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.84E-10 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 25.672 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 74 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 76 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.19E-10 | 78 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
LSLSLSLSLS KMEGRIKKIN KEAWTAEEDR KLAEVIAVSG ARRWQAIAAK AGLNRSGKSC 60 RLRWMNYLRP NIKRGNISDQ EEDLILRLHK LLGNRWSLIA GRLPGRTDNE IKNYWNSHLS 120 KKINNRKEKQ ISQASSEGDE MEQVRELEEK KSSESSEDHL KAIASFDMDD LFDFSMRTPL 180 NLGWPSEFLL SEDDNGLKGS SSCIHETLRE FNKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 16 | 125 | 2 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010064040.1 | 1e-146 | PREDICTED: transcription factor MYB114 | ||||
Swissprot | Q9SEI0 | 1e-49 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A059BYQ1 | 1e-130 | A0A059BYQ1_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010064040.1 | 1e-146 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-50 | myb domain protein 66 |